Browse Element(s) Details


Os.26879.1.S1_at

Description gb:AK109504.1
DB_XREF= gi:32994713
TID=Os.26879.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative cytochrome P450 (OJ1743A09.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D01, full insert sequence.
FL= gb:AK109504.1 gb:AK062585.1 gb:AK105985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1226011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed
LOC_Os03g12270Os.45954.1.S1_at11/113+6432197..6434699mannitol dehydrogenase, putative, expressed
LOC_Os03g12280NANA3+6435583..6436190hypothetical protein
LOC_Os03g12290Os.12728.1.S1_at11/113+6437026..6441842Glutamine synthetase root isozyme 5, putative, expressed
LOC_Os03g12300Os.11686.2.S1_x_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.11686.1.S1_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_at2/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_x_at1/113+6447427..6455524HEAT repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0008393molecular_functionfatty acid (omega-1)-hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26879.1.S1_at--94--1311Chr03:6423060..6423084 (25 bp)
AGATGAAGTCCATCATCGCCTGCGT
LOC_Os03g12260
Os.26879.1.S1_at--1085--7091Chr03:6422981..6423005 (25 bp)
GTCACTGACGCTGCGAATGGCGGAT
LOC_Os03g12260
Os.26879.1.S1_at--171--791Chr03:6422958..6422982 (25 bp)
ATGGGCTCCCCACTAGGGTGAAAGT
LOC_Os03g12260
Os.26879.1.S1_at--1067--2071Chr03:6422915..6422939 (25 bp)
ACATTTGGGCTTGTGGACCATGGCC
LOC_Os03g12260
Os.26879.1.S1_at--681--5531Chr03:6422879..6422903 (25 bp)
GAAACAGTTTCCCATGCAGATGATG
LOC_Os03g12260
Os.26879.1.S1_at--791--9811Chr03:6422820..6422844 (25 bp)
TAGAACCGTCCGAATAATTGGGCCG
LOC_Os03g12260
Os.26879.1.S1_at--965--8471Chr03:6422803..6422827 (25 bp)
TTGGGCCGGGCCTAAAGCTACGTTG
LOC_Os03g12260
Os.26879.1.S1_at--509--2351Chr03:6422790..6422814 (25 bp)
AAAGCTACGTTGGTGGCACGTCCTG
LOC_Os03g12260
Os.26879.1.S1_at--711--8651Chr03:6422767..6422791 (25 bp)
TGGGCCTATTCATACAGCTGCTGTA
LOC_Os03g12260
Os.26879.1.S1_at--195--9131Chr03:6422621..6422645 (25 bp)
TGCGGCAGACCGCTGAACAACCTTG
LOC_Os03g12260
Os.26879.1.S1_at--982--1731Chr03:6422602..6422626 (25 bp)
ACCTTGAACCGGTCATTATCATTTG
LOC_Os03g12260
Target Sequence 
AGATGAAGTCCATCATCGCCTGCGTGCTCCAGGAGCTCGAGCTCGCCGTCGACGGCGCGTACCGGCCGCGGCAGGTGACG
TCACTGACGCTGCGAATGGCGGATGGGCTCCCCACTAGGGTGAAAGTTAGAGGCAATTGAATNTGACATTTGGGCTTGTG
GACCATGGCCNGTAGCAGAAAGAAACAGTTTCCCATGCAGATGATGGTNCCGATCTCTAAACTTCTTANCAGGCCGAATA
TAGAACCGTCCGAATAATTGGGCCGGGCCTAAAGCTACGTTGGTGGCACGTCCTGGGCCTATTCATACAGCTGCTGTATG
TAAATGNTTTTCATTTTCTCTTTGGGAAGATCATGACANGTATGTCATTAGTCATTACTAGTACTCATTAGATAGTCACG
GATTCAATGAAATCTAGGGCGCTTGATGGGAGATGCAATTGCGGCAGACCGCTGAACAACCTTGAACCGGTCATTATCAT
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis