Browse Element(s) Details


Os.26884.1.S1_a_at

Description gb:AK067779.1
DB_XREF= gi:32977797
TID=Os.26884.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117J21, full insert sequence.
FL= gb:AK067779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6781011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g67780NANA1+39725304..39726995NA
LOC_Os01g67790OsAffx.18055.1.S1_at2/111+39728030..39728512hypothetical protein
LOC_Os01g67800NANA1+39730000..39734334retrotransposon protein, putative, unclassified
LOC_Os01g67810Os.26884.1.S1_a_at11/111+39735162..39737206transposon protein, putative, unclassified, expressed
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26884.1.S1_a_at--45--3731Chr01:39736666..39736690 (25 bp)
CTACGCCGAGGCTTGCTGGGCACCG
LOC_Os01g67810
Os.26884.1.S1_a_at--363--3371Chr01:39736686..39736710 (25 bp)
CACCGGTCGTGGCTTGCTTGGAACC
LOC_Os01g67810
Os.26884.1.S1_a_at--155--1671Chr01:39736722..39736746 (25 bp)
AGCCGGCGGCAAAAGTCGTGGCCAA
LOC_Os01g67810
Os.26884.1.S1_a_at--174--3391Chr01:39736750..39736774 (25 bp)
CAGCGCCGCGTTTGACAGAGCGTAT
LOC_Os01g67810
Os.26884.1.S1_a_at--1016--9271Chr01:39736838..39736862 (25 bp)
TCCGACAAGGTCGTGACTGCTTACG
LOC_Os01g67810
Os.26884.1.S1_a_at--313--1971Chr01:39736853..39736877 (25 bp)
ACTGCTTACGGCGTGTACCTGAAGA
LOC_Os01g67810
Os.26884.1.S1_a_at--523--8751Chr01:39736866..39736890 (25 bp)
TGTACCTGAAGACGCACCCCAAGCT
LOC_Os01g67810
Os.26884.1.S1_a_at--1117--5491Chr01:39736892..39736916 (25 bp)
GAGAAAAAACTCAGGTACACCGCCG
LOC_Os01g67810
Os.26884.1.S1_a_at--233--5891Chr01:39736928..39736952 (25 bp)
GAGCGGCTTTCGGAATTGTTCGAAG
LOC_Os01g67810
Os.26884.1.S1_a_at--125--1351Chr01:39736963..39736987 (25 bp)
AGAGCACAACAAATGAAGGCCGATT
LOC_Os01g67810
Os.26884.1.S1_a_at--173--10352Chr03:32150116..32150258 (25 bp)
TTTTTCGTCGCATCGAACTTTCCTA
NONE
Target Sequence 
CTACGCCGAGGCTTGCTGGGCACCGGTCGTGGCTTGCTTGGAACCCGCGGGCAGGAAGCCGGCGGCAAAAGTCGTGGCCA
AGTTCAGCGCCGCGTTTGACAGAGCGTATGAGAGTCAGGCGCGCTGCGAGGTCCGCGATCCCGCGCTCCGCGACGCGTTG
CGAAGGGCCGTGTCCGACAAGGTCGTGACTGCTTACGGCGTGTACCTGAAGACGCACCCCAAGCTCGAGAAAAAACTCAG
GTACACCGCCGGGGAGCTGGGCGAGCGGCTTTCGGAATTGTTCGAAGGAGAAGCTGCAGAGCACAACAAATGAAGGCCGA
TTTCAACTTTTTTTTTTCAAACTTTTAAATTTTTCGTCGCATCGAACTTTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26884.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis