Browse Element(s) Details


Os.26893.1.S1_at

Description gb:AK073139.1
DB_XREF= gi:32983162
TID=Os.26893.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023K06, full insert sequence.
FL= gb:AK073139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1310011/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_s_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_x_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13150Os.12191.1.S1_s_at2/113+7075783..7076623Non-symbiotic hemoglobin 3, putative
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26893.1.S1_at--247--10471Chr03:7057600..7057624 (25 bp)
TTACAGCACATTCCGTTGCAAGTGT
LOC_Os03g13100
Os.26893.1.S1_at--647--10731Chr03:7057615..7057639 (25 bp)
TTGCAAGTGTACAGCTGACCCGGGC
LOC_Os03g13100
Os.26893.1.S1_at--495--4251Chr03:7057634..7057658 (25 bp)
CCGGGCTTCTTCAGCTACATAAAGG
LOC_Os03g13100
Os.26893.1.S1_at--378--6971Chr03:7057736..7057760 (25 bp)
GTAGCGTTCACTTATTCTCTTGTAA
LOC_Os03g13100
Os.26893.1.S1_at--1044--7331Chr03:7057792..7057816 (25 bp)
GTGCACGTTGCATAGCTCTTATAAT
LOC_Os03g13100
Os.26893.1.S1_at--687--10171Chr03:7057811..7057835 (25 bp)
TATAATGCTAAATCTACCCCTCGGG
LOC_Os03g13100
Os.26893.1.S1_at--860--4591Chr03:7057970..7057994 (25 bp)
GCGACATATTCTTGGCCGAGCTTAT
LOC_Os03g13100
Os.26893.1.S1_at--341--10431Chr03:7057991..7058015 (25 bp)
TTATGGGCTCATCTTATCCGTCAAA
LOC_Os03g13100
Os.26893.1.S1_at--760--7551Chr03:7058024..7058048 (25 bp)
GTGGCCAGAAGGCAGCTGATCTCTA
LOC_Os03g13100
Os.26893.1.S1_at--414--4951Chr03:7058076..7058100 (25 bp)
GCATTCATTGCTGGGATTCTGGGAA
LOC_Os03g13100
Os.26893.1.S1_at--540--9011Chr03:7058105..7058129 (25 bp)
TGAATTCCGATTCCCATCTGCTGAA
LOC_Os03g13100
Target Sequence 
TTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTCTTCAGCTACATAAAGGAAAACTCTGCTCTTTTTTGTT
GCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTATAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTA
AATCATGACAAGAATTGGTGGCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAG
ACGATGGCATTTTGGAAGATAAAATTTTGAAATGTCCTTTTGCAAACATGCAAGGTAATGTATGAAGCATATTGGAAGTG
CCTGCGGATGCNTAGCACCTGGAAATTAATAGAAACAAACTAATTGAGTCGCGACATATTCTTGGCCGAGCTTATGGGCT
CATCTTATCCGTCAAACCTATTTTGTGGCCAGAAGGCAGCTGATCTCTAGGTCAGTTTTGGTTGACATATATCCAAGCAT
TCATTGCTGGGATTCTGGGAATGTCTGAATTCCGATTCCCATCTGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis