Browse Element(s) Details


Os.26930.1.S1_x_at

Description gb:AK062543.1
DB_XREF= gi:32972561
TID=Os.26930.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G04, full insert sequence.
FL= gb:AK103818.1 gb:AK062543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0659011/11expressed protein
LOC_Os01g314504/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g202391/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06550NANA4+3432441..3435185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06560Os.40360.1.S1_at8/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.2.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40360.1.S1_x_at7/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_x_at4/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.4.S1_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06560Os.40855.5.S1_x_at1/114+3438150..3440023hypothetical protein
LOC_Os04g06580NANA4+3450136..3450606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06590Os.26930.1.S2_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590OsAffx.25891.1.S1_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.26930.1.S1_x_at11/114+3452396..3457830expressed protein
LOC_Os04g06590Os.25740.1.S1_at1/114+3452396..3457830expressed protein
LOC_Os04g06590Os.46050.1.A1_x_at1/114+3452396..3457830expressed protein
LOC_Os04g06600NANA4+3464714..3467606retrotransposon protein, putative, unclassified
LOC_Os04g06610NANA4+3467928..3473315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06620NANA4+3474945..3475736retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06630Os.46306.1.S1_x_at2/114+3478780..3482974transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26930.1.S1_x_at--713--1711Chr04:3452463..3452487 (25 bp)
ACCACTCGATCTCTCTTATCGGAGC
LOC_Os04g06590
Os.26930.1.S1_x_at--12--10432Chr04:3452478..3452502 (25 bp)
TTATCGGAGCATTGCCGGCCAAGCC
LOC_Os04g06590
Os.26930.1.S1_x_at--570--2671Chr04:3452498..3452522 (25 bp)
AAGCCCTCGCGCCAATATATTTGCC
LOC_Os04g06590
Os.26930.1.S1_x_at--10--3593Chr04:3452561..3452585 (25 bp)
CTTCCACCTTGAGTTAAGCCACCAC
LOC_Os04g06590
Os.26930.1.S1_x_at--548--10731Chr04:3452569..3452593 (25 bp)
TTGAGTTAAGCCACCACCGCCAGCT
LOC_Os04g06590
Os.26930.1.S1_x_at--1142--3271Chr04:3452596..3452620 (25 bp)
CAAATCGGCCGAACCAAGCACTTGC
LOC_Os04g06590
Os.26930.1.S1_x_at--9--5431Chr04:3452606..3452630 (25 bp)
GAACCAAGCACTTGCCGCCGGCGTT
LOC_Os04g06590
Os.26930.1.S1_x_at--1147--9311Chr04:3452669..3452693 (25 bp)
TCCCTAGGTGCGTGGCGCTCGGGAA
LOC_Os04g06590
Os.26930.1.S1_x_at--384--10594Chr07:14898558..14898582 (25 bp)
TTCTCCTCTGTTGCTCGGCTGGAAA
NONE
Os.26930.1.S1_x_at--1108--9234Chr07:14898561..14898585 (25 bp)
TCCTCTGTTGCTCGGCTGGAAAGAG
NONE
Os.26930.1.S1_x_at--630--3874Chr07:14898565..14898589 (25 bp)
CTGTTGCTCGGCTGGAAAGAGAAGA
NONE
Target Sequence 
ACCACTCGATCTCTCTTATCGGAGCATTGCCGGCCAAGCCCTCGCGCCAATATATTTGCCNCGACGAGGAGAACCCATTT
CACCCCTTTCCCCCAACCCTTCCACCTTGAGTTAAGCCACCACCGCCAGCTCCCAAATCGGCCGAACCAAGCACTTGCCG
CCGGCGTTCCGGTCTCCTCCCTCTCCCTCTCCGCCAGCCACCGCCCTCCCTAGGTGCGTGGCGCTCGGGAACACCACCCA
CCGACGGCGTCGTCGCCTTCCGCCCGCCGGAGAGCCAGCGCCCCTCCTCTCCTTCTCCTCTGTTGCTCGGCTGGAAAGAG
AAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26930.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis