Browse Element(s) Details


Os.26939.1.A1_at

Description gb:AK101827.1
DB_XREF= gi:32987036
TID=Os.26939.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068E08, full insert sequence.
FL= gb:AK101827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0739011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26939.1.A1_at--435--6071Chr12:3641740..3641764 (25 bp)
GAGTATGCATGTCATGTCCGGTTCC
LOC_Os12g07390
Os.26939.1.A1_at--116--31Chr12:3641766..3641790 (25 bp)
ATTGGTTGTCCCGTATCTGCAGTTG
LOC_Os12g07390
Os.26939.1.A1_at--806--4991Chr12:3641814..3641838 (25 bp)
GCAGGCACTTCAGTTGGGACATTTA
LOC_Os12g07390
Os.26939.1.A1_at--401--9791Chr12:3641849..3641873 (25 bp)
TAAGCTATCCAAGTTCCTCAATTTA
LOC_Os12g07390
Os.26939.1.A1_at--566--5891Chr12:3642143..3642166 (24 bp)
GAGCGGAAGTCCTTATCAAGCCATT
LOC_Os12g07390
Os.26939.1.A1_at--527--4711Chr12:3642202..3642226 (25 bp)
GCTGGCTAGGGCCTAACTTTTGGTT
LOC_Os12g07390
Os.26939.1.A1_at--243--3131Chr12:3642227..3642251 (25 bp)
AATTTTGCTTCTGTTCTAGTTTCCT
LOC_Os12g07390
Os.26939.1.A1_at--420--6251Chr12:3642274..3642298 (25 bp)
GATGTCCCAGGGTGTATGTATCCCC
LOC_Os12g07390
Os.26939.1.A1_at--193--2711Chr12:3642353..3642377 (25 bp)
AAGCTACATCTGACTGCAGTTGACA
LOC_Os12g07390
Os.26939.1.A1_at--714--10311Chr12:3642384..3642408 (25 bp)
TTTCATGTTTATGGGACGCAACTCC
LOC_Os12g07390
Os.26939.1.A1_at--794--7651Chr12:3643176..3643200 (25 bp)
GGGATGGTTTGTACATGCACACATG
LOC_Os12g07390
Target Sequence 
GAGTATGCATGTCATGTCCGGTTCCCATTGGTTGTCCCGTATCTGCAGTTGGAGCTGTATAACAGGGGTCAACTGCAGGC
ACTTCAGTTGGGACATTTATTCTAACTTCTAAGCTATCCAAGTTCCTCAATTTATGAGCGGAAGTCCTTATCAAGCCATT
GCTGGACATGATGCAACTTCAATGCAAGAAGATTGGCTGGCTAGGGCCTAACTTTTGGTTAATTTTGCTTCTGTTCTAGT
TTCCTTCCTGAACCCCTAGAGGTTGATGATGTCCCAGGGTGTATGTATCCCCTGTGNTTTTTGTCGCTGTAAAACTACAC
ATGCTTGAATTTCTGTCAGCAGAAAAAAGCTACATCTGACTGCAGTTGACAGTTTTATTTCATGTTTATGGGACGCAACT
CCATTANNGCTGNTGGGATGGTTTGTACATGCACACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26939.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis