Browse Element(s) Details


Os.2694.1.S1_at

Description gb:X89891.1
DB_XREF= gi:1177319
GEN=efa27
TID=Os.2694.1
CNT=14
FEA=mRNA
TIER=ConsEnd
STK=5
UG=Os.2694 (NCBI UniGene Cluster)
DEF=O.sativa mRNA for Ca+2-binding EF hand protein.
PROD=EFA27 for EF hand, abscisic acid, 27kD
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4320011/11caleosin 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g43230Os.54245.1.S1_at11/114+25361853..25363998expressed protein
LOC_Os04g43240OsAffx.18229.1.S1_x_at1/114+25365486..25366283hypothetical protein
LOC_Os04g43250NANA4+25366954..25371558retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2694.1.S1_at--388--2731Chr04:25345082..25345106 (25 bp)
AAGCACGGCAGCGATAGCTCGACGT
LOC_Os04g43200
Os.2694.1.S1_at--702--4491Chr04:25344927..25344951 (25 bp)
GCCGGTCAATTTCGAGAGCATCTTC
LOC_Os04g43200
Os.2694.1.S1_at--502--8151Chr04:25344879..25344903 (25 bp)
GGACAAGCTCACGTTCGGCGATATC
LOC_Os04g43200
Os.2694.1.S1_at--251--2911Chr04:25344841..25344865 (25 bp)
AAGGCCAAAGGGTGGCGCTCGACTT
LOC_Os04g43200
Os.2694.1.S1_at--615--3791Chr04:25344687..25344848 (25 bp)
CTCGACTTGCTTGGGAGGATCGCGA
LOC_Os04g43200
Os.2694.1.S1_at--35--6531Chr04:25344649..25344673 (25 bp)
GATATTGCTCTACGTGCTTGCGAAA
LOC_Os04g43200
Os.2694.1.S1_at--973--4511Chr04:25344590..25344614 (25 bp)
GCCGCTGCTTCGATGGGAGCCTATT
LOC_Os04g43200
Os.2694.1.S1_at--793--10211Chr04:25344569..25344593 (25 bp)
TATTCGAGTCGATTGCCCAGCAGAG
LOC_Os04g43200
Os.2694.1.S1_at--648--5331Chr04:25344523..25344547 (25 bp)
GAAGTAGCCTCCTAATTTCATCGTC
LOC_Os04g43200
Os.2694.1.S1_at--814--8091Chr04:25344495..25344519 (25 bp)
GGACCTGGGATGTGCTTGATTGCTT
LOC_Os04g43200
Os.2694.1.S1_at--199--9991Chr04:25344442..25344466 (25 bp)
TAGCCACATCATGTTTGTCCATCTG
LOC_Os04g43200
Target Sequence 
AAGCACGGCAGCGATAGCTCGACGTACGACAACGAGGGAAGGTTTATGCCGGTCAATTTCGAGAGCATCTTCAGCAAGAA
CGCCCGCACGGCGCCGGACAAGCTCACGTTCGGCGATATCTGGCGGATGACCGAAGGCCAAAGGGTGGCGCTCGACTTGC
TTGGGAGGATCGCGAGTAAGGGGGAGTGGATATTGCTCTACGTGCTTGCGAAAGATGAGGAAGGATTCCTCAGGAAGGAG
GCTGTTCGCCGCTGCTTCGATGGGAGCCTATTCGAGTCGATTGCCCAGCAGAGAAGGGAGGCACATGAGAAGCAGAAGTA
GCCTCCTAATTTCATCGTCCCGGGACCTGGGATGTGCTTGATTGCTTGTGTGTGTTGTTGTGTGGACTATAGCTATAGCC
ACATCATGTTTGTCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis