Browse Element(s) Details


Os.26952.1.S1_at

Description gb:AK106608.1
DB_XREF= gi:32991817
TID=Os.26952.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative formylglycinamide ribonucleotide amidotransferase (P0434C04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E12, full insert sequence.
FL= gb:AK106608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6650011/11phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66480NANA1+38921299..38921592hypothetical protein
LOC_Os01g66490Os.32786.1.S1_at11/111+38938284..38940719No apical meristem protein, expressed
LOC_Os01g66500Os.26952.1.S1_at11/111+38945587..38950685phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os01g66510Os.34130.1.S1_at10/111+38954595..38958776MLO-like protein 1, putative, expressed
LOC_Os01g66520Os.14437.1.S1_at11/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.3.S1_at10/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66520Os.14437.2.S1_x_at8/111+38958512..38962420Serine/threonine-protein kinase RIO2, putative, expressed
LOC_Os01g66530Os.34782.1.S1_at11/111+38964284..38965034expressed protein
LOC_Os01g66544Os.50310.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.1.S1_s_at11/111+38969293..38972557expressed protein
LOC_Os01g66544OsAffx.23941.2.S1_at2/111+38969293..38972557expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26952.1.S1_at--454--7331Chr01:38945983..38946003 (21 bp)
GTGCAGGTACCTAATTGATGGCCAT
LOC_Os01g66500
Os.26952.1.S1_at--993--2311Chr01:38945946..38945970 (25 bp)
AAAGCTTGGAGCTGTGGACTCATTT
LOC_Os01g66500
Os.26952.1.S1_at--37--8091Chr01:38945931..38945955 (25 bp)
GGACTCATTTGGATACCGAAACGTG
LOC_Os01g66500
Os.26952.1.S1_at--1112--391Chr01:38945901..38945925 (25 bp)
ATCAGATGCTGGTGCGATGCGCTCA
LOC_Os01g66500
Os.26952.1.S1_at--924--171Chr01:38945814..38945838 (25 bp)
ATTTTATGATTCTTTCTTGCAGCTC
LOC_Os01g66500
Os.26952.1.S1_at--950--10491Chr01:38945697..38945721 (25 bp)
TTAATGAGAATAATCCTGTTGGCCC
LOC_Os01g66500
Os.26952.1.S1_at--506--5051Chr01:38945646..38945670 (25 bp)
GCAGAACAGGACACATGCCCATAAT
LOC_Os01g66500
Os.26952.1.S1_at--838--591Chr01:38945632..38945656 (25 bp)
ATGCCCATAATGTGTTGTTCGATTG
LOC_Os01g66500
Os.26952.1.S1_at--178--6651Chr01:38945619..38945643 (25 bp)
GTTGTTCGATTGTCCCATGATACTG
LOC_Os01g66500
Os.26952.1.S1_at--145--6491Chr01:38945601..38945625 (25 bp)
GATACTGTCATCTTTCTTCTATGGC
LOC_Os01g66500
Os.26952.1.S1_at--1148--10551Chr01:38945588..38945612 (25 bp)
TTCTTCTATGGCTATCCGTTTTCCA
LOC_Os01g66500
Target Sequence 
GTGCAGGTACCTAATTGATGGCCATATGATGAATATAAAAGCTTGGAGCTGTGGACTCATTTGGATACCGAAACGTGGTG
ATATCAGATGCTGGTGCGATGCGCTCAGCAGTCAGCATTGTTGTTACTGAGGATCGAATAAATGGGTTCAGCGAAATAAT
TAAAAGCAGATTTTATGATTCTTTCTTGCAGCTCTGAATCTTGCTGCTGGTTTGAAACTAGGAATCCTGTAAGGCTAGTA
GTGTTTTATTAGGCAGAGGTGAGGAGGCCTCAGGCCTGCAATGCTGTTAATGAGAATAATCCTGTTGGCCCTGCAGTGCT
GNNNNGAGAATACTATAGCAGAACAGGACACATGCCCATAATGTGTTGTTCGATTGTCCCATGATACTGTCATCTTTCTT
CTATGGCTATCCGTTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis