Browse Element(s) Details


Os.26966.1.A1_at

Description gb:CB632935
DB_XREF= gi:29627924
DB_XREF=OSIIEb11H22.r
CLONE=OSIIEb11H22
TID=Os.26966.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26966 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_196464.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4424011/11peroxisome biogenesis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44200Os.5001.1.S1_at11/118+27692190..27697450YT521-B-like family protein, expressed
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0016558biological_processprotein import into peroxisome matrix
GO:0005516molecular_functioncalmodulin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26966.1.A1_at--227--7771Chr08:27722499..27722523 (25 bp)
GGTGCAGATCTTGCAGCTATTCTAA
LOC_Os08g44240
Os.26966.1.A1_at--382--5631Chr08:27722583..27722607 (25 bp)
GACACACAGCCATGTATCAGCAAAG
LOC_Os08g44240
Os.26966.1.A1_at--410--2751Chr08:27722605..27722629 (25 bp)
AAGAACTCCTAATATCTACTGCTAG
LOC_Os08g44240
Os.26966.1.A1_at--308--6211Chr08:27722631..27722655 (25 bp)
GAGGCTAGACCTTCGACATCAGCAG
LOC_Os08g44240
Os.26966.1.A1_at--1085--9431Chr08:27722683..27722707 (25 bp)
TCGGTCAATTTGTATCGTCTAGGAA
LOC_Os08g44240
Os.26966.1.A1_at--668--931Chr08:27722703..27722724 (22 bp)
AGGAAGTCTGTTTCAACGAAGGCAA
LOC_Os08g44240
Os.26966.1.A1_at--601--2431Chr08:27722893..27722917 (25 bp)
AAAAGGTCACGCTGGCTTGAGTCTC
LOC_Os08g44240
Os.26966.1.A1_at--314--4931Chr08:27722907..27722931 (25 bp)
GCTTGAGTCTCTCTGCATTGGACAA
LOC_Os08g44240
Os.26966.1.A1_at--336--151Chr08:27723046..27723070 (25 bp)
ATTACGTTATGTTCATTGGCGCAGA
LOC_Os08g44240
Os.26966.1.A1_at--1121--2951Chr08:27723076..27723100 (25 bp)
AATGGCGAGCGCCTTTTTTCTGCTC
LOC_Os08g44240
Os.26966.1.A1_at--232--10391Chr08:27723091..27723115 (25 bp)
TTTTCTGCTCGGCAAATCTCAGTTT
LOC_Os08g44240
Target Sequence 
GGTGCAGATCTTGCAGCTATTCTAAGAGATGCTAAGCTGGCAGCAGTGCATAAAGTTCTGGAGGACAGAAATAATGGTAT
CTCAGACACACAGCCATGTATCAGCAAAGAACTCCTAATATCTACTGCTAGGGAGGCTAGACCTTCGACATCAGCAGAAC
AAAAAATGCAGTATGACATGGACTTCGGTCAATTTGTATCGTCTAGGAAGTCTGTTTCAACGAAGGCAAGGGAATCTAAA
GGAAAAAAGGTCACGCTGGCTTGAGTCTCTCTGCATTGGACAAGTACAATTACGTTATGTTCATTGGCGCAGAACAAGAA
TGGCGAGCGCCTTTTTTCTGCTCGGCAAATCTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26966.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis