Browse Element(s) Details


Os.26971.1.S1_at

Description gb:AK099945.1
DB_XREF= gi:32985154
TID=Os.26971.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative S-receptor kinase (B1099D03.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122K21, full insert sequence.
FL= gb:AK099945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6661011/11S-domain receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66590Os.18459.2.S1_x_at9/111+39003090..39006527AS2, putative, expressed
LOC_Os01g66600Os.23604.1.S1_at11/111+39011341..39014946rhodanese-like domain-containing protein, putative, expressed
LOC_Os01g66610Os.26971.1.S1_at11/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610Os.41415.2.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66610OsAffx.29815.1.S1_x_at1/111+39015070..39019468S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66620OsAffx.2198.1.S1_x_at3/111+39022580..39022984ABA-glucosyltransferase, putative
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26971.1.S1_at--381--4291Chr01:39015559..39015583 (25 bp)
CCTCCTGTTTGACGGCGACCTCAAG
LOC_Os01g66610
Os.26971.1.S1_at--507--6351Chr01:39015373..39015397 (25 bp)
GATGCCGAGGTCGTTCAAGGTGCTC
LOC_Os01g66610
Os.26971.1.S1_at--493--2891Chr01:39015357..39015381 (25 bp)
AAGGTGCTCGGCGATCCGTCCAACT
LOC_Os01g66610
Os.26971.1.S1_at--651--6371Chr01:39015345..39015369 (25 bp)
GATCCGTCCAACTACGTCAAGTTCT
LOC_Os01g66610
Os.26971.1.S1_at--751--9711Chr01:39015329..39015353 (25 bp)
TCAAGTTCTTCTCGGCGTTGCCGTC
LOC_Os01g66610
Os.26971.1.S1_at--360--6691Chr01:39015313..39015337 (25 bp)
GTTGCCGTCGATCTCATGATCACAC
LOC_Os01g66610
Os.26971.1.S1_at--59--3251Chr01:39015293..39015317 (25 bp)
CACACCGACCGGATTAATCAGCAGG
LOC_Os01g66610
Os.26971.1.S1_at--979--7651Chr01:39015269..39015293 (25 bp)
GGGATCTGGGATTATTATTACCTGC
LOC_Os01g66610
Os.26971.1.S1_at--981--10611Chr01:39015203..39015227 (25 bp)
TTCGAGATGTATTCAAGAGCTAGCT
LOC_Os01g66610
Os.26971.1.S1_at--762--5911Chr01:39015187..39015211 (25 bp)
GAGCTAGCTACCGATAATATTTTTT
LOC_Os01g66610
Os.26971.1.S1_at--101--6971Chr01:39015133..39015157 (25 bp)
GTAGCTACCGCTATATGGTTTTGCA
LOC_Os01g66610
Target Sequence 
CCTCCTGTTTGACGGCGACCTCAAGGGCGCCGTGGACGGCCGCCTCGCCGGCAACGCCGACATGGGCGAGGTGGAGAGGG
CGTGCAAGGTGGCGTGCTGGTGCGTGCAGGACTCGGAGGCGACGAGGCCGTCCATGGGGATGGTGGTGCAGGTGCTCGAG
GGGCTCGTCGACGTCAACGCGCCGCCGATGCCGAGGTCGTTCAAGGTGCTCGGCGATCCGTCCAACTACGTCAAGTTCTT
CTCGGCGTTGCCGTCGATCTCATGATCACACCGACCGGATTAATCAGCAGGGGATCTGGGATTATTATTACCTGCATATA
CATATAGCAGAAATGTATACAAGTTGTTAATTAGCTTTCGAGATGTATTCAAGAGCTAGCTACCGATAATATTTTTTCCT
CCAAATTATTGGCAGTAGCCTAGCTAGTAGCTACCGCTATATGGTTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis