Browse Element(s) Details


Os.26979.1.S1_x_at

Description gb:AK058449.1
DB_XREF= gi:32968467
TID=Os.26979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G09, full insert sequence.
FL= gb:AK058449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2995011/11nodulin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29910NANA12+17850222..17852393retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g29920NANA12+17854487..17856369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29930Os.47463.1.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29930Os.14491.2.S1_x_at1/1112+17858115..17862608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29940Os.2741.4.S1_x_at11/1112+17863508..17865991hypothetical protein
LOC_Os12g29950Os.26979.1.S1_x_at11/1112+17872364..17874487nodulin family protein, putative, expressed
LOC_Os12g29960Os.39513.1.A1_at11/1112+17878648..17880475Yippee-like protein At4g27740, putative
LOC_Os12g29970OsAffx.13631.4.S1_s_at11/1112+17883041..17884228hAT family dimerisation domain containing protein
LOC_Os12g29980OsAffx.19891.1.S1_at11/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29980Os.47815.1.A1_at9/1112+17887124..17890959transcription activator, putative, expressed
LOC_Os12g29990Os.53778.1.A1_s_at10/1112+17896026..17903097Glycoprotease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26979.1.S1_x_at--584--3551Chr12:17873883..17873907 (25 bp)
CATCGGCGCCTACGTGCTCAACGTG
LOC_Os12g29950
Os.26979.1.S1_x_at--25--7251Chr12:17873965..17873989 (25 bp)
GTCGCCGGCGACAAGATCTGCAAGG
LOC_Os12g29950
Os.26979.1.S1_x_at--792--7711Chr12:17873990..17874014 (25 bp)
GGGTGATGTGCTTCAAGCGCTCCTT
LOC_Os12g29950
Os.26979.1.S1_x_at--362--7931Chr12:17874096..17874120 (25 bp)
GGATATCTACGCCAGGTTCAAGGTG
LOC_Os12g29950
Os.26979.1.S1_x_at--599--5751Chr12:17874214..17874238 (25 bp)
GACGGAGTTCATGAACACGTGTCTA
LOC_Os12g29950
Os.26979.1.S1_x_at--416--5491Chr12:17874226..17874250 (25 bp)
GAACACGTGTCTAACTGAAGATGAT
LOC_Os12g29950
Os.26979.1.S1_x_at--121--6251Chr12:17874248..17874272 (25 bp)
GATGGATGACTAATTAACCTATATA
LOC_Os12g29950
Os.26979.1.S1_x_at--789--10832Chr12:17874318..17874342 (25 bp)
TTGTGTATTATTACTGGTGAATCTG
LOC_Os12g29950
Os.26979.1.S1_x_at--435--7771Chr12:17874333..17874357 (25 bp)
GGTGAATCTGTGTACTTCCGTGTTA
LOC_Os12g29950
Os.26979.1.S1_x_at--439--7251Chr12:17874342..17874366 (25 bp)
GTGTACTTCCGTGTTAAAATGTGAT
LOC_Os12g29950
Os.26979.1.S1_x_at--940--8672Chr12:17877316..17877340 (25 bp)
TGTGATGAGGTAAATTCGCATGGCT
NONE
Target Sequence 
CATCGGCGCCTACGTGCTCAACGTGCGGGTGGCGGGGCGGATGTACGACGCCGAGGCGGCCAGGCAGCACGGCGGCGTCG
CCGTCGCCGGCGACAAGATCTGCAAGGGGGTGATGTGCTTCAAGCGCTCCTTCCTCATCATCACCGGCGTCACCTTCGCC
GGCGCGCTCGTCTCGCTGCTGCTCGTGTGGAGGACGAGGAGCTTCTACAAGGGGGATATCTACGCCAGGTTCAAGGTGGC
GCCGGCGACGGCCGCGACGTCGGCGGCGGCGGCGGCGGAGGCGAGCTCGCCGGAGGTGGAGGAGAAGAAGGGCACTGAGA
AGAACAAGAAAGACGGAGTTCATGAACACGTGTCTAACTGAAGATGATGGATGACTAATTAACCTATATATTTTTCAGTT
GTTTTGAACGATAATTAGTGGGAAGATGAAACAGTTTGTGTATTATTACTGGTGAATCTGTGTACTTCCGTGTTAAAATG
TGATGAGGTAAATTCGCATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26979.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis