Browse Element(s) Details


Os.27061.2.A1_x_at

Description gb:AK067451.1
DB_XREF= gi:32977469
TID=Os.27061.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107E04, full insert sequence.
FL= gb:AK067451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3571011/11Cycloartenol synthase, putative, expressed
LOC_Os02g047501/11Cycloartenol synthase, putative, expressed
LOC_Os06g288201/11squalene/oxidosqualene cyclases family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35690OsAffx.20628.2.S1_x_at4/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.20628.2.S1_at3/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.10496.1.S1_at2/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.1647.1.S1_at2/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.20628.1.S1_at1/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35700OsAffx.22722.1.S1_at3/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.22722.1.S1_x_at2/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.1646.1.S1_x_at1/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35710Os.27061.2.A1_x_at11/1111+20445118..20458398Cycloartenol synthase, putative, expressed
LOC_Os11g35710OsAffx.27960.1.A1_at2/1111+20445118..20458398Cycloartenol synthase, putative, expressed
LOC_Os11g35720OsAffx.19178.1.S1_at11/1111+20459447..20460919hypothetical protein
LOC_Os11g35730Os.46012.2.S1_x_at9/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_x_at6/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.46012.3.S1_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.27088.1.A1_x_at4/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35730Os.54691.1.S1_x_at1/1111+20473271..20475825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35740OsAffx.8275.1.S1_at6/1111+20478504..20483033retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27061.2.A1_x_at--940--6452Chr11:20454633..20454657 (25 bp)
GATCAAGCTCATGCAGTGAATACTG
LOC_Os11g35710
Os.27061.2.A1_x_at--986--1972Chr11:20454654..20454678 (25 bp)
ACTGCCTGGGCAATGTTAGCTTTAA
LOC_Os11g35710
Os.27061.2.A1_x_at--843--1311Chr11:20454772..20454796 (25 bp)
AGATGGAGCGGGATCCAGCACCACT
LOC_Os11g35710
Os.27061.2.A1_x_at--1058--5071Chr11:20454789..20454813 (25 bp)
GCACCACTGCATCGTGCTGCAAAAG
LOC_Os11g35710
Os.27061.2.A1_x_at--1122--711Chr11:20458044..20458068 (25 bp)
ATGTTGGAGCCTTCAATGCATGCCT
LOC_Os11g35710
Os.27061.2.A1_x_at--818--3011Chr11:20458058..20458082 (25 bp)
AATGCATGCCTCTTCTTTAATTACC
LOC_Os11g35710
Os.27061.2.A1_x_at--517--8051Chr11:20458118..20458142 (25 bp)
GGAGAGTACTGTCGTCATCTTCACT
LOC_Os11g35710
Os.27061.2.A1_x_at--908--9211Chr11:20458142..20458166 (25 bp)
TCCACGAGGCGTGCATGAGCATGGC
LOC_Os11g35710
Os.27061.2.A1_x_at--234--4631Chr11:20458195..20458219 (25 bp)
GCGATGGCATGGCTGGAATATCTTA
LOC_Os11g35710
Os.27061.2.A1_x_at--790--10171Chr11:20458220..20458244 (25 bp)
TATAGTGTGTGTATGCAATCCAACC
LOC_Os11g35710
Os.27061.2.A1_x_at--486--5731Chr11:20458262..20458286 (25 bp)
GACTGGCAATCATAATTCCTTAGGG
LOC_Os11g35710
Target Sequence 
GATCAAGCTCATGCAGTGAATACTGCCTGGGCAATGTTAGCTTTAATTTGTGCAGGACAGATGGAGCGGGATCCAGCACC
ACTGCATCGTGCTGCAAAAGAATTAATCAATATGCAGTTGGAAACAGGAGAGTTCCCCCAACAAGAACATGTTGGAGCCT
TCAATGCATGCCTCTTCTTTAATTACCCCAACTACCGCAACTTATTCCCTATCTGGGCTCTTGGAGAGTACTGTCGTCAT
CTTCACTCCACGAGGCGTGCATGAGCATGGCATATGGTGATAAATGAAGGGGTCGATGGGCGATGGCATGGCTGGAATAT
CTTATATAGTGTGTGTATGCAATCCAACCTGATGTTGTATTGTCAAGACTGGCAATCATAATTCCTTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27061.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis