Browse Element(s) Details


Os.27100.1.A1_at

Description gb:CB657216
DB_XREF= gi:29660941
DB_XREF=OSJNEc12F24.r
CLONE=OSJNEc12F24
TID=Os.27100.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27100 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48228 (A.thaliana) T48228 probable protein kinase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2539011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25380NANA5+14664034..14665794Zinc knuckle family protein
LOC_Os05g25390Os.27100.1.A1_at11/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25390Os.20038.1.S1_at9/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25400Os.52154.1.S1_at11/115+14692430..14695010RNase3 domain containing protein, expressed
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27100.1.A1_at--335--2091Chr05:14675389..14675413 (25 bp)
ACATACTCCTCGACGAGCGGATGGA
LOC_Os05g25390
Os.27100.1.A1_at--375--8031Chr05:14675510..14675534 (25 bp)
GGAGTACTACCGGAACTACCAGCTC
LOC_Os05g25390
Os.27100.1.A1_at--225--9131Chr05:14675569..14675593 (25 bp)
TGCTGTTGGAGCTTCTGACGTGCAA
LOC_Os05g25390
Os.27100.1.A1_at--66--10611Chr05:14675581..14675605 (25 bp)
TTCTGACGTGCAAGCGCGCCATTGA
LOC_Os05g25390
Os.27100.1.A1_at--904--5771Chr05:14675622..14675646 (25 bp)
GACGATGTCAACTTGGCCGTGCACG
LOC_Os05g25390
Os.27100.1.A1_at--977--5871Chr05:14675667..14675691 (25 bp)
GAGCGCCTTATGGATGTCGTGGACC
LOC_Os05g25390
Os.27100.1.A1_at--722--2911Chr05:14675700..14675724 (25 bp)
AAGGATAACGCCACACAGCTGCAAT
LOC_Os05g25390
Os.27100.1.A1_at--255--10431Chr05:14675757..14675781 (25 bp)
TTAGGATGCCTCGAGGAACGCCGCC
LOC_Os05g25390
Os.27100.1.A1_at--1040--4391Chr05:14675779..14675803 (25 bp)
GCCAAAACCGGCCATCCATGAAGGA
LOC_Os05g25390
Os.27100.1.A1_at--377--10131Chr05:14675828..14675852 (25 bp)
TATGAATATCGAGGCCGGCAACGCT
LOC_Os05g25390
Os.27100.1.A1_at--1081--5111Chr05:14675867..14675891 (25 bp)
GCACAGCTTATGATCAGTGGTCAAT
LOC_Os05g25390
Target Sequence 
ACATACTCCTCGACGAGCGGATGGATGGCAAGGTATCCGACTTTGGGCTGTCCCGGCTGGCGGAGCAGGGGTTGAGCCAC
GTCTCGACGTGCGCGCAGGGGACGCTGGGTTACCTCGACCCGGAGTACTACCGGAACTACCAGCTCACCGACAAGAGTGA
CGTGTATAGCTTCGGTGTCGTGCTGTTGGAGCTTCTGACGTGCAAGCGCGCCATTGACTTTGGCCGTGGCGCCGACGATG
TCAACTTGGCCGTGCACGTGCAACGGGCAGCAGAGGAGGAGCGCCTTATGGATGTCGTGGACCCGGTGTTGAAGGATAAC
GCCACACAGCTGCAATGCGACACCATCAAGGCTCTCGGGTTTNNNGNGTTAGGATGCCTCGAGGAACGCCGCCAAAACCG
GCCATCCATGAAGGAGGTTGCAGAGGAGATCGAATACATTATGAATATCGAGGCCGGCAACGCTCATCTCAAGGAGCTGC
ACAGCTTATGATCAGTGGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27100.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis