Browse Element(s) Details


Os.27112.1.S1_at

Description gb:AY323485.1
DB_XREF= gi:33087074
GEN=PR2
TID=Os.27112.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27112 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NPR1-like protein (PR2) mRNA, complete cds.
PROD=NPR1-like protein
FL= gb:AY323485.1 gb:AK120715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0980011/11Regulatory protein NPR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09770Os.45934.1.S1_at6/111+5034225..5037500expressed protein
LOC_Os01g09780Os.17112.1.S1_at1/111+5042833..5043622NA
LOC_Os01g09790Os.33983.1.S1_at11/111+5049935..5052555IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09800Os.27112.1.S1_at11/111+5057218..5062031Regulatory protein NPR1, putative, expressed
LOC_Os01g09810OsAffx.10988.1.S1_at5/111+5070218..5071732hypothetical protein
LOC_Os01g09810Os.51226.1.S1_at1/111+5070218..5071732hypothetical protein
LOC_Os01g09820OsAffx.10988.1.S1_at2/111+5075929..5077169NA
LOC_Os01g09820Os.29072.1.S1_at1/111+5075929..5077169NA
LOC_Os01g09830Os.11166.1.S1_s_at11/111+5082635..5083343Glutaredoxin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009621biological_processresponse to pathogenic fungi
GO:0009625biological_processresponse to insect
GO:0009627biological_processsystemic acquired resistance
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009954biological_processproximal/distal pattern formation
GO:0010022biological_processmeristem determinacy
GO:0010227biological_processfloral organ abscission
GO:0048439biological_processflower morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27112.1.S1_at--195--4971Chr01:5058935..5058959 (25 bp)
GCATCAGTTTCTCTTGCAATGGCAG
LOC_Os01g09800
Os.27112.1.S1_at--451--2431Chr01:5058669..5058901 (25 bp)
AAAACCGAGTTGCTTTGGCGAGGAT
LOC_Os01g09800
Os.27112.1.S1_at--1134--9791Chr01:5058581..5058605 (25 bp)
TAACCTGGGTTCTGGTGCAAATCCA
LOC_Os01g09800
Os.27112.1.S1_at--637--9011Chr01:5058566..5058590 (25 bp)
TGCAAATCCACCTCCTGAAAGACAA
LOC_Os01g09800
Os.27112.1.S1_at--587--1431Chr01:5058497..5058521 (25 bp)
AGAACACTTAGCTCGGATGACGGCA
LOC_Os01g09800
Os.27112.1.S1_at--367--7991Chr01:5058484..5058507 (24 bp)
GGATGACGGCACTCTCCAAAACAGT
LOC_Os01g09800
Os.27112.1.S1_at--359--691Chr01:5057777..5057801 (25 bp)
ATGACCTGCAGGATGTTCTTCAGAA
LOC_Os01g09800
Os.27112.1.S1_at--89--5471Chr01:5057660..5057684 (25 bp)
GAACACCATTGCTCCCAAATAGTTG
LOC_Os01g09800
Os.27112.1.S1_at--740--10211Chr01:5057632..5057656 (25 bp)
TATTGATAGCTAACTGTCCTCCTGG
LOC_Os01g09800
Os.27112.1.S1_at--506--8531Chr01:5057610..5057634 (25 bp)
TGGAGCTACTCACCTGATGGTTGCC
LOC_Os01g09800
Os.27112.1.S1_at--998--8871Chr01:5057596..5057620 (25 bp)
TGATGGTTGCCTTCTGTCAATTGCC
LOC_Os01g09800
Target Sequence 
GCATCAGTTTCTCTTGCAATGGCAGGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAG
GATTATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAATTTAACCTGGGTTCTG
GTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTAAATGAAAGTCCTTTCATAATGAAAGAAGAACACTTA
GCTCGGATGACGGCACTCTCCAAAACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGAT
CATGGATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGGTTTCATGACCTGCAGG
ATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGACAGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCG
ATCGGGGCCATTCGACCAAGGAGATGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAG
CTACTCACCTGATGGTTGCCTTCTGTCAATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis