Browse Element(s) Details


Os.27156.1.S1_at

Description gb:AK119649.1
DB_XREF= gi:37989272
TID=Os.27156.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G09, full insert sequence.
FL= gb:AK119649.1 gb:AK066676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1280011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein
LOC_Os07g12830Os.18445.1.S1_at11/117+7346107..7349941Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27156.1.S1_at--643--2791Chr07:7321564..7321588 (25 bp)
AAGAGGACGCTGCATGTTGAGACCA
LOC_Os07g12800
Os.27156.1.S1_at--915--9911Chr07:7321610..7321634 (25 bp)
TACTGCGTCTCACCATCAGAGAGTA
LOC_Os07g12800
Os.27156.1.S1_at--167--3192Chr07:7321638..7321662 (25 bp)
CAATTTGTCATCATCTGGTTTCATA
LOC_Os07g12800
Os.27156.1.S1_at--749--5711Chr07:7321705..7321729 (25 bp)
GACTCTGAGAATGTCTGCTTCTGTT
LOC_Os07g12800
Os.27156.1.S1_at--956--7051Chr07:7321761..7321785 (25 bp)
GTAACCCTTGTGCAGGCGCAAACAT
LOC_Os07g12800
Os.27156.1.S1_at--585--7811Chr07:7321804..7321828 (25 bp)
GGTCACTTGTAGTTGTAGTACCTAT
LOC_Os07g12800
Os.27156.1.S1_at--330--8031Chr07:7321868..7321892 (25 bp)
GGAGTTGTTTTACCTGTTATGAAGA
LOC_Os07g12800
Os.27156.1.S1_at--397--5211Chr07:7321906..7321930 (25 bp)
GAATTCAAAAGTTCCTGACGTGTAA
LOC_Os07g12800
Os.27156.1.S1_at--689--1911Chr07:7321923..7321947 (25 bp)
ACGTGTAAGTATTTGTCATGCCATT
LOC_Os07g12800
Os.27156.1.S1_at--614--2351Chr07:7321986..7322010 (25 bp)
AAAGCTTCTGTAACTTTTGAACCAG
LOC_Os07g12800
Os.27156.1.S1_at--35--8091Chr07:7322030..7322054 (25 bp)
GGAGCTCTTGAGGTATGAACCAGAC
LOC_Os07g12800
Target Sequence 
AAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTT
GTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGACTCTGAGAATGTCTGCT
TCTGTTATGGAATTCAAAATTATGTTGGGCANTACCCGTAACCCTTGTGCAGGCGCAAACATATGGAGAGACTGAAGATT
GGTCACTTGTAGTTGTAGTACCTATTTTTTTTTTTCGTTCTTTTTTTTTTTGGGTCGAAAACCAGGAGTTGTTTTACCTG
TTATGAAGATTTCAGAGTTTTAGAATTCAAAAGTTCCTGACGTGTAAGTATTTGTCATGCCATTTGAAAATCTCTAGTTT
GAAGTTTAACTCTTTCCCTTGGAAAGCTTCTGTAACTTTTGAACCAGAGTTTGGAGCTGTATATTGGGAGCTCTTGAGGT
ATGAACCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis