Browse Element(s) Details


Os.27256.1.A1_at

Description gb:CB654192
DB_XREF= gi:29657917
DB_XREF=OSJNEc05P19.r
CLONE=OSJNEc05P19
TID=Os.27256.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27256 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181363.1 (A.thaliana) putative ammonium transporter (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g537806/11ammonium transporter AMT2.1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800Os.9344.1.S1_x_at11/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800OsAffx.24089.1.S1_x_at1/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27256.1.A1_at--713--9451Chr03:30782027..30782051 (25 bp)
TCGGCCTCGCGTACGCTGTCAGGGA
LOC_Os03g53780
Os.27256.1.A1_at--198--4611Chr03:30782234..30782258 (25 bp)
GCGAGACGTACGAGCAGTACTCCGT
LOC_Os03g53780
Os.27256.1.A1_at--570--6991Chr03:30782241..30782265 (25 bp)
GTACGAGCAGTACTCCGTGCACGGC
LOC_Os03g53780
Os.27256.1.A1_at--672--671Chr03:30782293..30782317 (25 bp)
ATGACGGCCAATCCCGTGGCGTCCA
LOC_Os03g53780
Os.27256.1.A1_at--792--7531Chr03:30782308..30782332 (25 bp)
GTGGCGTCCAAAGCCGACGAGATGA
LOC_Os03g53780
Os.27256.1.A1_at--440--3291Chr03:30782316..30782340 (25 bp)
CAAAGCCGACGAGATGATATGGATA
LOC_Os03g53780
Os.27256.1.A1_at--618--7931Chr03:30782336..30782360 (25 bp)
GGATATAAGGTGTTTTGACTTTGGT
NONE
Os.27256.1.A1_at--565--5691Chr03:30782352..30782376 (25 bp)
GACTTTGGTCATGTTTAGATAATAT
NONE
Os.27256.1.A1_at--539--9831Chr03:30782415..30782439 (25 bp)
TAAAGTCAAAACGTGCTATAACCTA
NONE
Os.27256.1.A1_at--519--6071Chr03:30782449..30782473 (25 bp)
GAGTATTTGCTAAGGGAAATGCTAT
NONE
Os.27256.1.A1_at--684--9851Chr03:30782471..30782495 (25 bp)
TATAGTAAGGGCATACAGTTACGGG
NONE
Target Sequence 
TCGGCCTCGCGTACGCTGTCAGGGACGGCCGCGCCGGCTCGGGGCTCCGGCAGGTCGGCGTGCAGCTGGCCGGGATCGCG
TTCGTGGTGGCGCTCAACGTCGCCGTGACGAGCGCCGTGTGCCTGGCCGTCAGGGTGGCCGTGCCGCAGCTCGCCGGCGG
CGGCGACGCCATACACGGCGAGGACGCGTACGCGGTGTGGGGCGACGGCGAGACGTACGAGCAGTACTCCGTGCACGGCG
GCGGCAGCAACCACGGCGGCTTCCCCATGACGGCCAATCCCGTGGCGTCCAAAGCCGACGAGATGATATGGATATAAGGT
GTTTTGACTTTGGTCATGTTTAGATAATATATTAAACTTAGTTAAATTTAAAGTAGTTTAATTTTGTCTAAAGTCAAAAC
GTGCTATAACCTAAAACGGAGGGAGTATTTGCTAAGGGAAATGCTATAGTAAGGGCATACAGTTACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27256.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis