Browse Element(s) Details


Os.27287.1.S1_at

Description gb:CB659075
DB_XREF= gi:29662800
DB_XREF=OSJNEc15L11.r
CLONE=OSJNEc15L11
TID=Os.27287.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27287 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T51400 (A.thaliana) T51400 hypothetical protein F14F8_90 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5729011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27287.1.S1_at--1041--3471Chr04:33892226..33892250 (25 bp)
CAGGTTGTACTTGGAGACGCTCTCG
LOC_Os04g57290
Os.27287.1.S1_at--790--2231Chr04:33892308..33892332 (25 bp)
AAATTCCCACGGTCGCTGCTGGATG
LOC_Os04g57290
Os.27287.1.S1_at--154--251Chr04:33892334..33892358 (25 bp)
ATATCTAGTTGCAGGAGCTCGCACA
LOC_Os04g57290
Os.27287.1.S1_at--760--1591Chr04:33892349..33892373 (25 bp)
AGCTCGCACACGGTTGTTCTTGGTA
LOC_Os04g57290
Os.27287.1.S1_at--66--6611Chr04:33892379..33892403 (25 bp)
GATTGGGCTATACAGCACACTGCAG
LOC_Os04g57290
Os.27287.1.S1_at--855--1251Chr04:33892450..33892474 (25 bp)
AGATAAGCCGGATGCCGCCCAAGTA
LOC_Os04g57290
Os.27287.1.S1_at--202--4891Chr04:33892482..33892506 (25 bp)
GCTTTGCTGAGGTTGTCTGCTGAAA
LOC_Os04g57290
Os.27287.1.S1_at--927--2651Chr04:33892619..33892643 (25 bp)
AAGCCAGCTTTGCAATAGCCAGATC
LOC_Os04g57290
Os.27287.1.S1_at--920--1691Chr04:33892635..33892659 (25 bp)
AGCCAGATCTGTTTTTATGAGCCAA
LOC_Os04g57290
Os.27287.1.S1_at--543--6031Chr04:33892691..33892715 (25 bp)
GAGATGTCCTGCGAAGGCTCAAGCT
LOC_Os04g57290
Os.27287.1.S1_at--890--631Chr04:33892719..33892743 (25 bp)
ATGCTTCTCAGTTCAGTATCTGGAT
LOC_Os04g57290
Target Sequence 
CAGGTTGTACTTGGAGACGCTCTCGCCACTGGGGCTGATGATGTATAGAGTGGATGCGGGCAATTGGGAGCATATACCAG
CCAAATTCCCACGGTCGCTGCTGGATGGATATCTAGTTGCAGGAGCTCGCACACGGTTGTTCTTGGTAGGAAGGATTGGG
CTATACAGCACACTGCAGAGTATGAGGATCTGGGAGCTTGATCATGGTAGGACAGTCTGGGTAGAGATAAGCCGGATGCC
GCCCAAGTACTTCAGGGCTTTGCTGAGGTTGTCTGCTGAAAGGTTCGAGTGCTTTGGGCAGGACAACTTGATATGTTTCA
CATCGTGGAACCAGGGAAAAGGTCTTCTATACGATGTGGATAAGAAGGCTTGGTCATGGATTGCTGGTTGTGCAAGCCAG
CTTTGCAATAGCCAGATCTGTTTTTATGAGCCAAGATTTGACACGTTGATCTATTGACAATGGTAGAGATGTCCTGCGAA
GGCTCAAGCTCAAATGCTTCTCAGTTCAGTATCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis