Browse Element(s) Details


Os.27296.1.A1_at

Description gb:CB659676
DB_XREF= gi:29663401
DB_XREF=OSJNEc16N18.r
CLONE=OSJNEc16N18
TID=Os.27296.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27296 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176870.1 (A.thaliana) kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2463011/11serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24580NANA8+14728711..14731793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24590Os.47463.1.S1_x_at6/118+14738224..14741948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24590Os.14491.2.S1_x_at4/118+14738224..14741948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24600OsAffx.17131.1.S1_at11/118+14742476..14743156hypothetical protein
LOC_Os08g24610OsAffx.29330.1.S1_at11/118+14743508..14744566hypothetical protein
LOC_Os08g24620OsAffx.29331.1.S1_at10/118+14746184..14747111hypothetical protein
LOC_Os08g24630Os.27296.1.A1_at11/118+14753908..14755034serine/threonine protein kinase, putative, expressed
LOC_Os08g24640OsAffx.21897.5.S1_x_at2/118+14760302..14763243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24650NANA8+14763560..14769655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24660OsAffx.29532.2.S1_at2/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24660OsAffx.29532.2.S1_x_at1/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24670OsAffx.29332.1.S1_at11/118+14776210..14777124Legume lectins beta domain containing protein, expressed
LOC_Os08g24680OsAffx.22711.4.A1_x_at2/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680Os.27189.2.S1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22711.2.S1_x_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22711.4.A1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.8420.1.S1_at1/118+14779169..14782696retrotransposon protein, putative, unclassified
LOC_Os08g24680OsAffx.22927.1.S1_x_at1/118+14779169..14782696retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27296.1.A1_at--57--10251Chr08:14754472..14754496 (25 bp)
TTTGGAGACACCATGGAGCCGTGAC
LOC_Os08g24630
Os.27296.1.A1_at--640--1671Chr08:14754456..14754480 (25 bp)
AGCCGTGACCACCAAGTCTGATGTA
LOC_Os08g24630
Os.27296.1.A1_at--311--4871Chr08:14754427..14754451 (25 bp)
GCTATGGGATGCTAATTCTTCAAAT
LOC_Os08g24630
Os.27296.1.A1_at--392--5811Chr08:14754366..14754390 (25 bp)
GACCGTAAGCAAGTATTTCCCTGAA
LOC_Os08g24630
Os.27296.1.A1_at--967--5231Chr08:14754324..14754348 (25 bp)
GAATCAATTTTGTGGTGCTGCTACC
LOC_Os08g24630
Os.27296.1.A1_at--671--7311Chr08:14754310..14754334 (25 bp)
GTGCTGCTACCGAAGGCATTGATAG
LOC_Os08g24630
Os.27296.1.A1_at--894--5591Chr08:14754246..14754270 (25 bp)
GACAATAGGGTTTTGGTGCATCCAA
LOC_Os08g24630
Os.27296.1.A1_at--391--2771Chr08:14754211..14754235 (25 bp)
AAGACCGGCCTTCCATGAGTGAGGT
LOC_Os08g24630
Os.27296.1.A1_at--251--5271Chr08:14754139..14754163 (25 bp)
GAATGTCTTGCTGCGGAATTGATAA
LOC_Os08g24630
Os.27296.1.A1_at--611--9211Chr08:14754114..14754138 (25 bp)
TCCAAGCATTGTTTGATCACTCCAT
LOC_Os08g24630
Os.27296.1.A1_at--118--3011Chr08:14754015..14754039 (25 bp)
AATGCATGGGTTGTAGGTTCGATAA
LOC_Os08g24630
Target Sequence 
TTTGGAGACACCATGGAGCCGTGACCACCAAGTCTGATGTATATAGCTATGGGATGCTAATTCTTCAAATGGTTGGAGCA
AGGGAAAATACCAATGCAAGCATGCAGACCGTAAGCAAGTATTTCCCTGAATGGTTATATGACAACTTGAATCAATTTTG
TGGTGCTGCTACCGAAGGCATTGATAGTAGAAACACTTGCATATCAGAGGTTGCTCGCAAGTTGGTGACAATAGGGTTTT
GGTGCATCCAATGTACACCTGAAGACCGGCCTTCCATGAGTGAGGTCATTGACATGTTTGATAGAAGCATGCATGAACTG
CAACTACCACCAAGAATGTCTTGCTGCGGAATTGATAATCCAAGCATTGTTTGATCACTCCATCAAGTCTTTATTTTAAC
ATACTCAGTTTTAATATTTTAATACTTATACCATTTGGTAAGACGAGGCTTAGTAAAAATGCATGGGTTGTAGGTTCGAT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27296.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis