Browse Element(s) Details


Os.27297.3.A1_a_at

Description gb:CB666572
DB_XREF= gi:29670297
DB_XREF=OSJNEd13I11.r
CLONE=OSJNEd13I11
TID=Os.27297.3
CNT=13
FEA=EST
TIER=Stack
STK=10
UG=Os.27297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-E08, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1025010/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10210OsAffx.16933.1.S1_at10/118+5915434..5916765hypothetical protein
LOC_Os08g10220NANA8+5924367..5926105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.14491.2.S1_x_at7/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10230Os.47463.1.S1_x_at4/118+5927068..5929463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g10240OsAffx.29131.1.S1_at10/118+5933187..5934569hypothetical protein
LOC_Os08g10240Os.50819.1.S1_at1/118+5933187..5934569hypothetical protein
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27297.3.A1_a_at--956--9991Chr08:5952265..5952289 (25 bp)
TAGCTGTGAAGCAATTATCTCCAAC
LOC_Os08g10250
Os.27297.3.A1_a_at--1075--10491Chr08:5952326..5952350 (25 bp)
TTCAACTATATCCACCGTTCAACAC
LOC_Os08g10250
Os.27297.3.A1_a_at--310--4011Chr08:5952341..5952365 (25 bp)
CGTTCAACACCGAAACCTCGTGAAG
LOC_Os08g10250
Os.27297.3.A1_a_at--1109--7631Chr08:5952426..5952450 (25 bp)
GGGAGCCTTGATCAAACTATCTTTG
LOC_Os08g10250
Os.27297.3.A1_a_at--259--10051Chr08:5952567..5952591 (25 bp)
TAGATTGGAGAACCCGCTTCGACAT
LOC_Os08g10250
Os.27297.3.A1_a_at--905--4891Chr08:5952582..5952606 (25 bp)
GCTTCGACATATGCGTAGGCATCGC
LOC_Os08g10250
Os.27297.3.A1_a_at--974--6091Chr08:5952632..5952656 (25 bp)
GAGTCCAGCACAAGGATAGTTCACA
LOC_Os08g10250
Os.27297.3.A1_a_at--415--3631Chr08:5952679..5952703 (25 bp)
CTTGCTTGATGGTGATCTCAATCCA
LOC_Os08g10250
Os.27297.3.A1_a_at--1087--7751Chr08:5952689..5952713 (25 bp)
GGTGATCTCAATCCAAAAATCTCTG
LOC_Os08g10250
Os.27297.3.A1_a_at--1046--1491Chr08:5952758..5952780 (23 bp)
AGCACAGGAGTAGCTGGCACGCTTG
LOC_Os08g10250
Os.27297.3.A1_a_at--104--10011NONE
TAGCTGGCACGCTTGGTTATCTAGC
NONE
Target Sequence 
TAGCTGTGAAGCAATTATCTCCAACATCTCATCAAGGGAAACGGGAGTTCATGACAGAAATTTCAACTATATCCACCGTT
CAACACCGAAACCTCGTGAAGTTGTATGGTTGTTGCATTGAGAGCAAAGCACCACTTCTGGTCTATGAATTCCTAGAAAA
TGGGAGCCTTGATCAAACTATCTTTGCTACTGGCAAGACAAATATGAACCTAGATTGGAGAACCCGCTTCGACATATGCG
TAGGCATCGCAAGAGGCCTAGCATATCTCCATGAGGAGTCCAGCACAAGGATAGTTCACAGGGACATCAAAACCAGCAAT
GTCTTGCTTGATGGTGATCTCAATCCAAAAATCTCTGACTTTGGGCTAGCTAGGCATTATGAGGACAACATGACTCACCT
TAGCACAGGAGTAGCTGGCACGCTTGGTTATCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27297.3.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis