Browse Element(s) Details


Os.27314.1.S1_at

Description gb:AK060247.1
DB_XREF= gi:32970265
TID=Os.27314.1
CNT=52
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein S7 from chromosome 10 chloroplast insetion (OSJNBb0075K12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H11, full insert sequence.
FL= gb:AK060247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5806011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27314.1.S1_at--574--51115Chr10:10468458..10468482 (25 bp)
GCACATTTTCGTTAATCCATGAACA
NONE
Os.27314.1.S1_at--573--5714Chr10:10468472..10468496 (25 bp)
ATCCATGAACAGAATCTAGGTATGT
NONE
Os.27314.1.S1_at--410--100915Chr10:10468488..10468512 (25 bp)
TAGGTATGTAGACACATGGATCCAT
NONE
Os.27314.1.S1_at--518--8313Chr10:10468503..10468527 (25 bp)
ATGGATCCATACATCTCGATCGGAA
NONE
Os.27314.1.S1_at--703--20913Chr10:10468513..10468537 (25 bp)
ACATCTCGATCGGAAAAGAATCAAT
NONE
Os.27314.1.S1_at--668--14713Chr10:10468544..10468568 (25 bp)
AGAATCGGACGATATCTTTCTCGAA
NONE
Os.27314.1.S1_at--633--81114Chr10:10468550..10468574 (25 bp)
GGACGATATCTTTCTCGAAACAAAC
NONE
Os.27314.1.S1_at--161--55913Chr10:10468599..10468623 (25 bp)
GAAATCATGATCAACTAAGCCCTCT
NONE
Os.27314.1.S1_at--194--96313Chr10:10468603..10468627 (25 bp)
TCATGATCAACTAAGCCCTCTCGGG
NONE
Os.27314.1.S1_at--1039--30713Chr10:10468674..10468698 (25 bp)
AATAAGGTTTGATCCTATTCATGGG
NONE
Os.27314.1.S1_at--118--65513Chr10:10468699..10468723 (25 bp)
GATTCCGTAAATATCCCATTCCAAA
NONE
Target Sequence 
GCACATTTTCGTTAATCCATGAACAGAATCTAGGTATGTAGACACATGGATCCATACATCTCGATCGGAAAAGAATCAAT
AGAAGGAGAATCGGACGATATCTTTCTCGAAACAAACAAAAANNAAAANAAAGAGAAAACAGAAATCATGATCAACTAAG
CCCTCTCGGGGGCTTGCTTAAGAATAAGAAAGAGGAATCTTATGGAAATAGCATGGAATAAGGTTTGATCCTATTCATGG
GGATTCCGTAAATATCCCATTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis