Browse Element(s) Details


Os.27363.1.S1_at

Description gb:AK110913.1
DB_XREF= gi:32996122
TID=Os.27363.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C04, full insert sequence.
FL= gb:AK110913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2720011/11FAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27130OsAffx.24446.1.S1_at10/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27130OsAffx.4419.1.S1_at1/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27140OsAffx.24447.1.S1_at11/112+15972844..15974179hypothetical protein
LOC_Os02g27150OsAffx.12219.1.S1_at11/112+15975786..15976337hypothetical protein
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed
LOC_Os02g27210OsAffx.24449.1.S1_at11/112+16000553..16003428expressed protein
LOC_Os02g27210Os.54723.1.S1_at2/112+16000553..16003428expressed protein
LOC_Os02g27210Os.26894.1.A1_x_at1/112+16000553..16003428expressed protein
LOC_Os02g27210OsAffx.20993.1.S1_at1/112+16000553..16003428expressed protein
LOC_Os02g27220Os.46339.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27220Os.9705.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27230NANA2+16015719..16021663retrotransposon protein, putative, unclassified
LOC_Os02g27240Os.28943.1.S1_x_at2/112+16022284..16024758retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27363.1.S1_at--656--1831Chr02:15998622..15998646 (25 bp)
ACGCGATGCACGTCATGGGCCCGTT
LOC_Os02g27200
Os.27363.1.S1_at--1054--9391Chr02:15998708..15998732 (25 bp)
TCGTCGCGTGCCACCGTAGAAGGTG
LOC_Os02g27200
Os.27363.1.S1_at--180--9351Chr02:15998852..15998876 (25 bp)
TCGCTGGAGTCCTTCACCGTTGGGA
LOC_Os02g27200
Os.27363.1.S1_at--694--10491Chr02:15998864..15998888 (25 bp)
TTCACCGTTGGGACTTTGCTAAGAA
LOC_Os02g27200
Os.27363.1.S1_at--28--9091Chr02:15998880..15998904 (25 bp)
TGCTAAGAACGAAGTCGGCCGTGGT
LOC_Os02g27200
Os.27363.1.S1_at--905--9771Chr02:15998904..15998928 (25 bp)
TAAGGCTTGTGTGCGCGGTCGTCAT
LOC_Os02g27200
Os.27363.1.S1_at--985--10091Chr02:15998937..15998961 (25 bp)
TAGGCACCAGGTCACGCAGGCATGC
LOC_Os02g27200
Os.27363.1.S1_at--310--7831Chr02:15998946..15998970 (25 bp)
GGTCACGCAGGCATGCAGACTATGA
LOC_Os02g27200
Os.27363.1.S1_at--160--9051Chr02:15998959..15998983 (25 bp)
TGCAGACTATGACTGCGGCTCTCTG
LOC_Os02g27200
Os.27363.1.S1_at--892--4691Chr02:15998973..15998997 (25 bp)
GCGGCTCTCTGTAACTTTTCTGAAG
LOC_Os02g27200
Os.27363.1.S1_at--570--9891Chr02:15999016..15999040 (25 bp)
TACTTCCTTGAATTATTCGATCTGT
LOC_Os02g27200
Target Sequence 
ACGCGATGCACGTCATGGGCCCGTTCATCGGCCAGGGCGGCTCCTCCGCGCTGGAGGACGCCGTCGTGCTCGCCCGCTCG
CTATCGTCGTCGCGTGCCACCGTAGAAGGTGGCGCCGACGACTTGGCCGGTGACCGTGGTCGCCGGCACGATCAGCCGCA
GGTCGACGGCGAGATGGGCGCGGCGATAGGGAGGTACGTGAGGGAGAGGAGGGCGAGGGTGATAAGGCTGTCGCTGGAGT
CCTTCACCGTTGGGACTTTGCTAAGAACGAAGTCGGCCGTGGTAAGGCTTGTGTGCGCGGTCGTCATGGCTNTTNTAGGC
ACCAGGTCACGCAGGCATGCAGACTATGACTGCGGCTCTCTGTAACTTTTCTGAAGTGATAAGAAGTTTGTTTTTACTTC
CTTGAATTATTCGATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis