Browse Element(s) Details


Os.27375.1.A1_at

Description gb:AK060290.1
DB_XREF= gi:32970308
TID=Os.27375.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D05, full insert sequence.
FL= gb:AK060290.1 gb:AK099849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0446011/1150S ribosomal protein L3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04500Os.54143.1.S1_at10/112+1998224..2000813S-adenosyl-methyltransferase MraW family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27375.1.A1_at--1120--5111Chr02:1973367..1973391 (25 bp)
GCACAACTTCAAGCGAGGGCTGATG
LOC_Os02g04460
Os.27375.1.A1_at--365--6131Chr02:1973353..1973377 (25 bp)
GAGGGCTGATGACCCACGGCTCCAA
LOC_Os02g04460
Os.27375.1.A1_at--1121--2131Chr02:1973323..1973347 (25 bp)
ACAGAGCTCTGGGATCGATCGGTGC
LOC_Os02g04460
Os.27375.1.A1_at--550--6631Chr02:1973186..1973210 (25 bp)
GTTGTCATGATCAAGGGCGCCGTTC
LOC_Os02g04460
Os.27375.1.A1_at--169--371Chr02:1973177..1973201 (25 bp)
ATCAAGGGCGCCGTTCCAGGGAAGC
LOC_Os02g04460
Os.27375.1.A1_at--423--3231Chr02:1973124..1973148 (25 bp)
CAAGATCGTCGGCAAGAACATCCCC
LOC_Os02g04460
Os.27375.1.A1_at--206--10391Chr02:1973085..1973109 (25 bp)
TTTTCTCATGTGTTTCGTCCTGTTC
LOC_Os02g04460
Os.27375.1.A1_at--1035--8771Chr02:1973075..1973099 (25 bp)
TGTTTCGTCCTGTTCTGTGAGATTT
LOC_Os02g04460
Os.27375.1.A1_at--171--6531Chr02:1973055..1973079 (25 bp)
GATTTGTGATCTGTTGTTTACTGAA
LOC_Os02g04460
Os.27375.1.A1_at--976--11Chr02:1973021..1973045 (25 bp)
ATTGGAGATGTTCTTTGCCCATGTC
LOC_Os02g04460
Os.27375.1.A1_at--463--3511Chr02:1973002..1973026 (25 bp)
CATGTCCAGGTTTTGTATACGCGTA
LOC_Os02g04460
Target Sequence 
GCACAACTTCAAGCGAGGGCTGATGACCCACGGCTCCAAGAGCCACAGAGCTCTGGGATCGATCGGTGCCGGGACGACGC
CGGGTCGGGTGTACAAGGGGAAGAAGATGCCCGGGAGGATGGGAGGAACCAAGACCAAGATCAGGAAGCTCAAGATCGTC
AAGATCGACAACGACCTGAAAGTTGTCATGATCAAGGGCGCCGTTCCAGGGAAGCCCGGGAACCTCCTCCGCATCGCTCC
TGCCAAGATCGTCGGCAAGAACATCCCCAAGAACTAGACTATTTTTCTCATGTGTTTCGTCCTGTTCTGTGAGATTTGTG
ATCTGTTGTTTACTGAATTACTGTAAATTGGAGATGTTCTTTGCCCATGTCCAGGTTTTGTATACGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27375.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis