Browse Element(s) Details


Os.27379.1.S1_at

Description gb:AK069659.1
DB_XREF= gi:32979683
TID=Os.27379.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028D15, full insert sequence.
FL= gb:AK069659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4436011/11Male sterility protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0016628molecular_functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27379.1.S1_at--128--32Chr08:27789099..27789123 (25 bp)
ATTGGAGATCCTCCACCTGGTGAAC
LOC_Os08g44360
Os.27379.1.S1_at--648--8791Chr08:27789339..27789362 (24 bp)
TGCTTCGACGACATAAACTTGGAGA
LOC_Os08g44360
Os.27379.1.S1_at--465--5011Chr08:27789387..27789411 (25 bp)
GCAGGAACCCTCAAGACGATGAAAT
LOC_Os08g44360
Os.27379.1.S1_at--101--5591Chr08:27789407..27789431 (25 bp)
GAAATGTTCAACTTCGACCCAAAGA
LOC_Os08g44360
Os.27379.1.S1_at--205--1731Chr08:27789431..27789455 (25 bp)
ACCATCGATTGGGAGGACTACTTCT
LOC_Os08g44360
Os.27379.1.S1_at--142--3651Chr08:27789451..27789475 (25 bp)
CTTCTACAGGATCCATATACCCGGT
LOC_Os08g44360
Os.27379.1.S1_at--581--10151Chr08:27789466..27789490 (25 bp)
TATACCCGGTGTGCTCAAGTACATC
LOC_Os08g44360
Os.27379.1.S1_at--346--9791Chr08:27789559..27789583 (25 bp)
TAAGTATTGTACTCTGGCTCTGCTC
LOC_Os08g44360
Os.27379.1.S1_at--355--9251Chr08:27789582..27789606 (25 bp)
TCCTCCCTGTTACAAATGCCAGCAA
LOC_Os08g44360
Os.27379.1.S1_at--392--3031Chr08:27789596..27789620 (25 bp)
AATGCCAGCAATCTACCTAAGTATG
LOC_Os08g44360
Os.27379.1.S1_at--23--371Chr08:27789740..27789764 (25 bp)
ATAATACACTGTGTGCTTGTGCTTG
LOC_Os08g44360
Target Sequence 
ATTGGAGATCCTCCACCTGGTGAACCTCCTCCTTTGTGGCCTCTTCTCCCGCCTCTACTCTAACCTCGCCCGCCAGTACC
GCTACGTCATGCACCTCGTCGACGTCTACGGCCCCTTCGCCTTCTTCAAAGGATGCTTCGACGACATAAACTTGGAGAGG
CTGAGGCAGAGGATGGGGAAGAGCAGGAACCCTCAAGACGATGAAATGTTCAACTTCGACCCAAAGACCATCGATTGGGA
GGACTACTTCTACAGGATCCATATACCCGGTGTGCTCAAGTACATCCTCAAGTAAAACACACATGGATGATGATGGATTA
TATCATCATGTATAACAGCTGGATGAAGAAGACTTAAGTATTGTACTCTGGCTCTGCTCCTCCCTGTTACAAATGCCAGC
AATCTACCTAAGTATGCTGATACTAGCTTGTATGGGAATATGCATGCTTGCTCAAAGAATTAATCTTTAATATATGTCAA
CTACTAGACTAAGTAATGCTTGTATCGGAGAAGAATCACCATATCTTAATCAATAATAATACACTGTGTGCTTGTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis