Browse Element(s) Details


Os.27381.1.S1_at

Description gb:AK065409.1
DB_XREF= gi:32975427
TID=Os.27381.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013011H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013011H16, full insert sequence.
FL= gb:AK065409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0734011/11HEAT repeat family protein, expressed
LOC_Os02g073301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07310Os.54612.1.A1_at11/112+3748475..3755489Piwi domain containing protein, expressed
LOC_Os02g07320OsAffx.2535.1.S1_at11/112+3761051..3762806hypothetical protein
LOC_Os02g07330Os.54543.1.S1_at11/112+3772296..3776104expressed protein
LOC_Os02g07330Os.27381.1.S1_at1/112+3772296..3776104expressed protein
LOC_Os02g07340Os.27381.1.S1_at11/112+3778087..3791873HEAT repeat family protein, expressed
LOC_Os02g07350Os.5934.1.S1_at11/112+3792678..3796759Inositol monophosphatase family protein, expressed
LOC_Os02g07360Os.15690.1.S1_at10/112+3797704..3800985pentatricopeptide, putative, expressed
LOC_Os02g07370Os.49936.2.A1_at3/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.52238.1.S1_at2/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.33601.3.S1_x_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370OsAffx.15708.1.S1_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07380NANA2+3811254..3817625retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27381.1.S1_at--908--9231Chr02:3789749..3789773 (25 bp)
TCCTTGGGCCTCTTTATGGAAATTA
LOC_Os02g07340
Os.27381.1.S1_at--1154--5091Chr02:3789785..3789809 (25 bp)
GCACATTACATTGAAAACCGCCGAA
LOC_Os02g07340
Os.27381.1.S1_at--1035--3911Chr02:3790010..3790034 (25 bp)
CTGGCCAGGTGCTATTGAAGAAATT
LOC_Os02g07340
Os.27381.1.S1_at--28--491Chr02:3790052..3790076 (25 bp)
ATCTGAGTGGCTCATGACTTGACTT
LOC_Os02g07340
Os.27381.1.S1_at--356--3451Chr02:3790578..3790602 (25 bp)
CAGTGCTGAAGGATCTGGAGTACTC
LOC_Os02g07340
Os.27381.1.S1_at--34--7952Chr02:3775204..3775315 (25 bp)
GGATTTCAGATCATGCCCAGATGCA
LOC_Os02g07330
Os.27381.1.S1_at--949--2471Chr02:3791511..3791535 (25 bp)
AACACGTTCGGCAAGCTAGCGAGTT
LOC_Os02g07340
Os.27381.1.S1_at--950--2971Chr02:3791537..3791561 (25 bp)
AATGGTGGGTTGGAAGAGCTCTACA
LOC_Os02g07340
Os.27381.1.S1_at--245--8891Chr02:3791569..3791593 (25 bp)
TGAGGCAGAACTAGCTCTACAGCAA
LOC_Os02g07340
Os.27381.1.S1_at--182--6391Chr02:3791651..3791675 (25 bp)
GATCGCCTTTTGTTTCTATTGCATG
LOC_Os02g07340
Os.27381.1.S1_at--549--8271Chr02:3791749..3791773 (25 bp)
GGCAGTGCTTGAAGGGCTCTGCTTC
LOC_Os02g07340
Target Sequence 
TCCTTGGGCCTCTTTATGGAAATTAAGAAGATAGCAGCACATTACATTGAAAACCGCCGAAAACTGAACAAAGAAAAAGG
GATATGCAATAGGAAACAGGTACATCCAATTGAGATAATCGAAGAAATCTGGCCAGGTGCTATTGAAGAAATTTATGAGC
TTAGTTTAAAATCTGAGTGGCTCATGACTTGACTTGTGAATGGTGAGAGTGAAAATATCAGTGCTGAAGGATCTGGAGTA
CTCTGAAAATCATGAATGGGTTAGTGTTGAAGGCGATTATGCAACAATTGGGATTTCAGATCATGCCCAGATGCAAACAC
GTTCGGCAAGCTAGCGAGTTAAATGGTGGGTTGGAAGAGCTCTACAGGAAAGATGAGGCAGAACTAGCTCTACAGCAAAA
GATGAGGCATAACTTGGTTGAACGTTTTTTTGTTTCTCTTTTTTTTGGGTGAGGGGATCGCCTTTTGTTTCTATTGCATG
CTATGTAACGGTGGAGAGAATCATTATCTTCACTATTTGAAAAATGATTCTACAGAAGATGATTGTTTTTTATGGCAGTG
CTTGAAGGGCTCTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis