Browse Element(s) Details


Os.27383.2.S1_x_at

Description gb:AK109332.2
DB_XREF= gi:42821649
TID=Os.27383.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F11, full insert sequence.
FL= gb:AK109332.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g487109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48720OsAffx.13413.1.S1_at10/113+27717552..27718624hypothetical protein
LOC_Os03g48730OsAffx.13414.1.S1_at11/113+27721532..27721801hypothetical protein
LOC_Os03g48740NANA3+27724513..27727600Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os03g48750Os.54370.1.S1_at11/113+27728273..27729269Oxalate oxidase GF-2.8 precursor, putative, expressed
LOC_Os03g48760NANA3+27733065..27733754Oxalate oxidase GF-2.8 precursor, putative
LOC_Os03g48770Os.12106.1.S1_at1/113+27737404..27738087Oxalate oxidase 2 precursor, putative
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27383.2.S1_x_at--789--3691Chr03:27714948..27714972 (25 bp)
CTACGAGTACCTCACCTACTTCGAG
LOC_Os03g48710
Os.27383.2.S1_x_at--813--9931Chr03:27714800..27714824 (25 bp)
TACGTCTACCTCGACATCGGCTGGA
LOC_Os03g48710
Os.27383.2.S1_x_at--799--4511NONE
GCCGCGTGGTTCCAGAACTTCTTTG
NONE
Os.27383.2.S1_x_at--701--3411Chr03:27713163..27713187 (25 bp)
CAGAACTTCTTTGCCCAGTTTTAGG
LOC_Os03g48710
Os.27383.2.S1_x_at--889--7931Chr03:27713127..27713151 (25 bp)
GGATTTGGTCTTGTGACAGTGTTAC
LOC_Os03g48710
Os.27383.2.S1_x_at--982--2111NONE
ACAGTGTTACATGAGCTTCGGGCCT
NONE
Os.27383.2.S1_x_at--478--10612Chr05:7417915..7417939 (25 bp)
TTCGGGCCTTCCACGAGTGTAGTGA
NONE
Os.27383.2.S1_x_at--363--6591Chr03:27712358..27712382 (25 bp)
GATTGCCAGCATCCAACTACAGAAG
LOC_Os03g48710
Os.27383.2.S1_x_at--536--9231Chr03:27712224..27712248 (25 bp)
TCCATGATACTGGAGCGTGCTCCAT
LOC_Os03g48710
Os.27383.2.S1_x_at--182--8091Chr03:27712213..27712237 (25 bp)
GGAGCGTGCTCCATGATTCAAATGC
LOC_Os03g48710
Os.27383.2.S1_x_at--406--8831Chr03:27712200..27712224 (25 bp)
TGATTCAAATGCAATTACACCTGTT
LOC_Os03g48710
Target Sequence 
CTACGAGTACCTCACCTACTTCGAGCCCCGCGTCACGGGGGTCCTCCGCTACGGCTCCCTCACCGGCCTCTCCGGGGTCA
AGGTCCGCCGCTTCCTCGTCTGGTTCGACGTCGTCCGCGTCAAGGTCGACCTCCCGCCGCCCCCGCGCTACGTCTACCTC
GACATCGGCTGGATCACCCGCAAGCTCCCCGCCGACGAGTTCGAGTCCCCCCACGAGTGCGAGGACTCCNNGAAATGCCG
CCTCTCGTCCGCGCTCGCCACGGTCGCCGCGTGGTTCCAGAACTTCTTTGCCCAGTTTTAGGGGATGGAGAAGGGATTTG
GTCTTGTGACAGTGTTACATGAGCTTCGGGCCTTCCACGAGTGTAGTGATTGCCAGCATCCAACTACAGAAGAATANNNN
NNGGTNNNNNNNTNTCTNNANNNNNTNTATNNTNTNNNANNNNCANNTNNNCNNNNNCNNGAGANACACATGATCTTGTG
GAGATTTATTGGTCATTTTGATCCATGATACTGGAGCGTGCTCCATGATTCAAATGCAATTACACCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27383.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis