Browse Element(s) Details


Os.27387.2.S1_x_at

Description gb:NM_188146.1
DB_XREF= gi:34903375
GEN=OSJNBa0036E02.20
TID=Os.27387.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D48432(S14625)~unknown protein (OSJNBa0036E02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST D48432(S14625)~unknown protein (OSJNBa0036E02.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1739611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17360NANA1+9987148..9992824retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17370OsAffx.7292.1.S1_x_at1/111+9994366..9996904retrotransposon protein, putative, unclassified
LOC_Os01g17380Os.47130.4.A1_x_at2/111+9997844..9998170retrotransposon protein, putative, unclassified
LOC_Os01g17390Os.286.1.S1_a_at11/111+10000730..10004531F-box family protein, putative, expressed
LOC_Os01g17396Os.27387.1.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.1.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_x_at11/111+10004835..10008373expressed protein
LOC_Os01g17396Os.27387.2.S1_at11/111+10004835..10008373expressed protein
LOC_Os01g17402Os.31518.1.S1_at11/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17402Os.31518.2.S1_x_at10/111+10008653..10012233Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g17410OsAffx.11090.1.S1_at11/111+10013004..10013216hypothetical protein
LOC_Os01g17420NANA1+10015530..10017154hypothetical protein
LOC_Os01g17430Os.1236.1.S1_at11/111+10018208..10023767Adaptin N terminal region family protein, expressed
LOC_Os01g17440Os.47130.4.A1_x_at3/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17440Os.27455.2.S1_at1/111+10025332..10027790retrotransposon protein, putative, unclassified
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27387.2.S1_x_at--636--7631Chr01:10007351..10007375 (25 bp)
GGGACTCCAGGCTATCTGATGATCT
LOC_Os01g17396
Os.27387.2.S1_x_at--628--6291Chr01:10007334..10007358 (25 bp)
GATGATCTGAACACAACGACCGTAT
LOC_Os01g17396
Os.27387.2.S1_x_at--162--3071Chr01:10007273..10007297 (25 bp)
AATCTTTCGACACCTCTGAACATTG
LOC_Os01g17396
Os.27387.2.S1_x_at--430--5031Chr01:10007249..10007273 (25 bp)
GCAGTACAGTGCCTTCAGATTCAGA
LOC_Os01g17396
Os.27387.2.S1_x_at--298--6511Chr01:10007213..10007237 (25 bp)
GATATCCATCACAGTTTGAGCCTCT
LOC_Os01g17396
Os.27387.2.S1_x_at--324--5911Chr01:10006921..10006945 (25 bp)
GAGCTCTGGTGTCCGATTCCAAGAA
LOC_Os01g17396
Os.27387.2.S1_x_at--276--2771Chr01:10006876..10006900 (25 bp)
AAGACGACATGGACACCTGCGGTTT
LOC_Os01g17396
Os.27387.2.S1_x_at--1095--10511Chr01:10006841..10006865 (25 bp)
TTCAGCCATGGCCTGCAAGATGATG
LOC_Os01g17396
Os.27387.2.S1_x_at--29--8751Chr01:10006751..10006775 (25 bp)
TGTAGTTACACTATTTTCGTGCCTT
LOC_Os01g17396
Os.27387.2.S1_x_at--366--10591Chr01:10006736..10006760 (25 bp)
TTCGTGCCTTTGGTCAAGAATTTCG
LOC_Os01g17396
Os.27387.2.S1_x_at--104--771Chr01:10006704..10006728 (25 bp)
ATGTCCGCAATTTCGGGAATTTCGA
LOC_Os01g17396
Target Sequence 
GGGACTCCAGGCTATCTGATGATCTGAACACAACGACCGTATATTCAGACAATCATGGCAGCAACGGTGGCGGCACGCAA
TCTTTCGACACCTCTGAACATTGCAGTACAGTGCCTTCAGATTCAGATGAGCAACCTGGATATCCATCACAGTTTGAGCC
TCTGCACATGGAGCAAACAAACGACATGTTCTTGAGCCAGTTTTCAGATGAGGAGGTGAGGAGGATGGATGCTCCGTTCC
AGGCGCTGGACATGTTCCCGGACTCCATGCACAGGCTCATGTCCTACGAACACATACTGAACGGAGCTCTGGTGTCCGAT
TCCAAGAATCAGGAGGTGAACATGGATCAAGACGACATGGACACCTGCGGTTTCCCTCTCTACTTCAGCCATGGCCTGCA
AGATGATGGCGGCTTGCCTTCTTTTGCCAAGGGGATGGTTGCTGCAGACACCTCCTCCATGGACAAGGTGAATTGTAGTT
ACACTATTTTCGTGCCTTTGGTCAAGAATTTCGAAATGAAATGTCCGCAATTTCGGGAATTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27387.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis