Browse Element(s) Details


Os.27480.1.S1_at

Description gb:AK072146.1
DB_XREF= gi:32982169
TID=Os.27480.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127P15, full insert sequence.
FL= gb:AK072146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1365011/11Glycosyl hydrolases family 38 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13610OsAffx.30187.1.S1_at11/116+7539775..7540865hypothetical protein
LOC_Os06g13620OsAffx.15410.1.S1_at11/116+7543707..7544168hypothetical protein
LOC_Os06g13630OsAffx.16522.1.S1_at1/116+7544994..7548258transposon protein, putative, Mutator sub-class
LOC_Os06g13640Os.27936.1.A1_at1/116+7554464..7557366expressed protein
LOC_Os06g13650Os.27480.1.S1_at11/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13650OsAffx.27618.1.S1_at10/116+7562738..7570034Glycosyl hydrolases family 38 protein, expressed
LOC_Os06g13660Os.27835.1.S1_at11/116+7574001..7580552Alanyl-tRNA synthetase, putative, expressed
LOC_Os06g13670Os.50197.1.S1_at10/116+7583781..7589606Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os06g13680Os.8239.1.S1_at11/116+7590593..7592328senescence-associated protein, putative, expressed
LOC_Os06g13690Os.27160.1.A1_at3/116+7594184..7594953hypothetical protein
LOC_Os06g13690Os.25513.1.S1_at1/116+7594184..7594953hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27480.1.S1_at--932--5011Chr06:7564223..7564247 (25 bp)
GCAGGTGCATATACTTCCTTTCTTC
LOC_Os06g13650
Os.27480.1.S1_at--1121--4291Chr06:7564207..7564231 (25 bp)
CCTTTCTTCTCGGTGATTGTTTGAC
LOC_Os06g13650
Os.27480.1.S1_at--1108--10671Chr06:7564137..7564161 (25 bp)
TTCCATTTCTTTTTGCTCTAGTGCA
LOC_Os06g13650
Os.27480.1.S1_at--18--1131Chr06:7564118..7564142 (25 bp)
AGTGCAGACTAGCTGTGCTATTACA
LOC_Os06g13650
Os.27480.1.S1_at--610--2151Chr06:7564096..7564120 (25 bp)
ACAGCTTCTGTATGCTTTGCTACTG
LOC_Os06g13650
Os.27480.1.S1_at--461--7131Chr06:7564069..7564093 (25 bp)
GTCATACAGCGTGATATGCCGGCTA
LOC_Os06g13650
Os.27480.1.S1_at--1048--591Chr06:7564054..7564078 (25 bp)
ATGCCGGCTAGTGCTATCATAATAG
LOC_Os06g13650
Os.27480.1.S1_at--817--8172Chr12:13573705..13573730 (24 bp)
GGAACCTGAACCTATATATGAGCAA
NONE
Os.27480.1.S1_at--174--10351Chr06:7564004..7564028 (25 bp)
TTTTTCGTGTATCTCCTTTTGGTAT
LOC_Os06g13650
Os.27480.1.S1_at--991--4291Chr06:7563990..7564014 (25 bp)
CCTTTTGGTATCTGACTTTTGTAGT
LOC_Os06g13650
Os.27480.1.S1_at--348--1111Chr06:7563968..7563992 (25 bp)
AGTGTGATCACAGAGCTTGCTGGCC
LOC_Os06g13650
Target Sequence 
GCAGGTGCATATACTTCCTTTCTTCTCGGTGATTGTTTGACAAATTGGAAATTTGGGGCACATTCAAGCAAGCAAATTGT
AGTAATTTCCATTTCTTTTTGCTCTAGTGCAGACTAGCTGTGCTATTACAGCTTCTGTATGCTTTGCTACTGTAGTCATA
CAGCGTGATATGCCGGCTAGTGCTATCATAATAGGAACCTGAACCTATATATGAGCAAATTTTTCGTGTATCTCCTTTTG
GTATCTGACTTTTGTAGTGTGATCACAGAGCTTGCTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis