Browse Element(s) Details


Os.27534.1.A1_at

Description gb:AK064268.1
DB_XREF= gi:32974286
TID=Os.27534.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E02, full insert sequence.
FL= gb:AK064268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1314011/11Xaa-Pro dipeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13110Os.8042.1.S1_at9/112+6964022..6971934Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os02g13120OsAffx.24223.1.S1_x_at11/112+6976262..6976817expressed protein
LOC_Os02g13120OsAffx.24223.1.S1_at11/112+6976262..6976817expressed protein
LOC_Os02g13130Os.26551.1.S1_at11/112+6979535..6985005KH domain containing protein, expressed
LOC_Os02g13140Os.27534.1.A1_at11/112+6985342..6993604Xaa-Pro dipeptidase, putative, expressed
LOC_Os02g13150Os.8408.1.S1_at11/112+7006064..7010650Pollen-specific protein SF21, putative, expressed
LOC_Os02g13160Os.19456.1.S1_x_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.19456.1.S1_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.3246.2.S1_at2/112+7012780..7014847F-box family protein, putative
LOC_Os02g13170Os.17268.1.S1_at10/112+7016805..7024340Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004251molecular_functionX-Pro dipeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27534.1.A1_at--563--9751Chr02:6993042..6993066 (25 bp)
TAATAGCCTGTCCAAAGCGTCCTGA
LOC_Os02g13140
Os.27534.1.A1_at--261--1751Chr02:6993069..6993093 (25 bp)
ACCTTACCTCAGTTTTTCAGTGCTC
LOC_Os02g13140
Os.27534.1.A1_at--329--5451Chr02:6993096..6993120 (25 bp)
GAACCCTGTCCAAGCAGATACATAT
LOC_Os02g13140
Os.27534.1.A1_at--164--6291Chr02:6993160..6993184 (25 bp)
GATGTTCATCGGTCATTTCATATGT
LOC_Os02g13140
Os.27534.1.A1_at--949--991Chr02:6993193..6993217 (25 bp)
AGGATCTGTTGAAGACGGTCCCCTC
LOC_Os02g13140
Os.27534.1.A1_at--467--2331Chr02:6993302..6993326 (25 bp)
AAAGATGCCGTTCAATTTCCTTGCG
LOC_Os02g13140
Os.27534.1.A1_at--635--6551Chr02:6993326..6993350 (25 bp)
GATTAGTTCAAACGTCTCTGTTCAT
LOC_Os02g13140
Os.27534.1.A1_at--594--351Chr02:6993349..6993373 (25 bp)
ATAACCATCAACTCTATTGGCATGA
LOC_Os02g13140
Os.27534.1.A1_at--448--5151Chr02:6993398..6993422 (25 bp)
GCAACACTTGTTTTGTGCAATCACA
LOC_Os02g13140
Os.27534.1.A1_at--108--7151Chr02:6993447..6993471 (25 bp)
GTCTTGCTTCATTCTACAATCTAGT
LOC_Os02g13140
Os.27534.1.A1_at--601--2231Chr02:6993462..6993486 (25 bp)
ACAATCTAGTCGGTTTCAGTTTTAT
LOC_Os02g13140
Target Sequence 
TAATAGCCTGTCCAAAGCGTCCTGACCACCTTACCTCAGTTTTTCAGTGCTCCTGAACCCTGTCCAAGCAGATACATATG
GAGATAAAAATAGGTGAACCTCCTGGGGTTGTTGGTCTGATGTTCATCGGTCATTTCATATGTTAAATTGTAGGATCTGT
TGAAGACGGTCCCCTCGANTATCGTCCNTTGAAAACTGAAAGGTACAAATAAAAGATCAAGAAAACTGAAAAGTACAATA
AAAAGATCAGCTTGAGAGNAAAAGATGCCGTTCAATTTCCTTGCGATTAGTTCAAACGTCTCTGTTCATAACCATCAACT
CTATTGGCATGAGAACAGCATGAGGTGCATAATCATGCAACACTTGTTTTGTGCAATCACAGGACTAATGTGGTATCATT
AAAATGTCTTGCTTCATTCTACAATCTAGTCGGTTTCAGTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27534.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis