Browse Element(s) Details


Os.27560.1.S1_at

Description gb:AK066505.1
DB_XREF= gi:32976523
TID=Os.27560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069E21, full insert sequence.
FL= gb:AK066505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6425011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein
LOC_Os03g64260Os.56144.1.S1_at11/113+36240425..36241341AP2 domain containing protein, expressed
LOC_Os03g64269NANA3+36245249..36245845hypothetical protein
LOC_Os03g64280Os.53291.1.S1_at11/113+36257304..36258584oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27560.1.S1_at--1022--6131Chr03:36235690..36235714 (25 bp)
GAGGGTATCGCTTTTGCAAAACCAG
LOC_Os03g64250
Os.27560.1.S1_at--501--511Chr03:36235720..36235744 (25 bp)
ATCGTCTCTTCTCCAAAGTGGTCAG
LOC_Os03g64250
Os.27560.1.S1_at--1150--1371Chr03:36235768..36235792 (25 bp)
AGAGCCTCGGAGAAGTCCCAGACTA
LOC_Os03g64250
Os.27560.1.S1_at--225--8991Chr03:36235798..36236219 (25 bp)
TGAACCTCCCAGTAGGTGGCACTGA
LOC_Os03g64250
Os.27560.1.S1_at--969--8191Chr03:36237746..36237770 (25 bp)
GGAAGTTTCATGTTGGCAGCCAGCA
LOC_Os03g64250
Os.27560.1.S1_at--147--1491Chr03:36237767..36237791 (25 bp)
AGCAAGCATGCATCTCTCTGTGACC
LOC_Os03g64250
Os.27560.1.S1_at--156--8691Chr03:36237785..36237809 (25 bp)
TGTGACCCTGGCACGAAATTGCTTT
LOC_Os03g64250
Os.27560.1.S1_at--802--2231Chr03:36237800..36237824 (25 bp)
AAATTGCTTTGCTGTGGCGGGCGAC
LOC_Os03g64250
Os.27560.1.S1_at--1139--4591Chr03:36237820..36237844 (25 bp)
GCGACAATGAGGTCCCTTCCAGGAA
LOC_Os03g64250
Os.27560.1.S1_at--413--8731Chr03:36237850..36237874 (25 bp)
TGTCATACTAGTACTACTGCCGCTG
LOC_Os03g64250
Os.27560.1.S1_at--604--3211Chr03:36237903..36237927 (25 bp)
CAAGCCCAAGGGATTCACTTTTTGT
LOC_Os03g64250
Target Sequence 
GAGGGTATCGCTTTTGCAAAACCAGAGTCCATCGTCTCTTCTCCAAAGTGGTCAGTCCTATTTGCAAAACCAGAATGCAG
AGCCTCGGAGAAGTCCCAGACTACAAAATGAACCTCCCAGTAGGTGGCACTGAGGGGATTGAAGCGAATGAATGTTAGTG
AGGGGGAGAGCAATCAGCTCCGAAAAGATGGCCTGAGTAAATATCTGTGAAATTACAGGAACTTCCTGCCCTTTTCGGAG
GTTCCCCTTATAAAAGAAGAAAGATGAGAGTAGCATGTGCTATCACAAGACGAAAGCAATGTGATTGTGATTTTTTGTGA
AGGAAGCAAGCATGCAAAGGGGAAGTTTCATGTTGGCAGCCAGCAAGCATGCATCTCTCTGTGACCCTGGCACGAAATTG
CTTTGCTGTGGCGGGCGACAATGAGGTCCCTTCCAGGAAGCGATTGTCATACTAGTACTACTGCCGCTGCTGTAGTAAAG
CATACTAGTGGCAAAGCCAAGCCCAAGGGATTCACTTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis