Browse Element(s) Details


Os.27595.1.S2_at

Description gb:AK072532.1
DB_XREF= gi:32982555
TID=Os.27595.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127L07, full insert sequence.
FL= gb:AK072532.1 gb:AK120904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2531011/11phosphatidylinositol transfer-like protein III, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25300OsAffx.5920.1.S1_at11/118+15249567..15251054hypothetical protein
LOC_Os08g25310Os.27595.1.S2_at11/118+15258729..15265628phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os08g25310Os.27595.1.S1_at11/118+15258729..15265628phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os08g25330OsAffx.22947.1.S1_x_at11/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.2.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.3.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.5.S1_x_at1/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25340OsAffx.17145.1.S1_at10/118+15282192..15285240hypothetical protein
LOC_Os08g25350NANA8+15286027..15289348Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27595.1.S2_at--621--5251Chr08:15264505..15264529 (25 bp)
GAATCTGATCTCGAACGCACAAAGA
LOC_Os08g25310
Os.27595.1.S2_at--316--1471Chr08:15264962..15264983 (22 bp)
AGAAGGTGCTGCAAGCTACCGTGAT
LOC_Os08g25310
Os.27595.1.S2_at--130--2771Chr08:15265207..15265231 (25 bp)
AAGACTCAGGAGTACATTTGGCGGC
LOC_Os08g25310
Os.27595.1.S2_at--292--7931Chr08:15265272..15265296 (25 bp)
GGATTCGGTGTTTGGATTGGCTCAA
LOC_Os08g25310
Os.27595.1.S2_at--267--2471Chr08:15265320..15265344 (25 bp)
AACAGCAAAATATCAGCTCCCCTTC
LOC_Os08g25310
Os.27595.1.S2_at--781--4791Chr08:15265335..15265359 (25 bp)
GCTCCCCTTCTGAATCTAAGAGGCT
LOC_Os08g25310
Os.27595.1.S2_at--170--1331Chr08:15265353..15265377 (25 bp)
AGAGGCTTGTCTATCCTTGATGTTA
LOC_Os08g25310
Os.27595.1.S2_at--313--2091Chr08:15265444..15265468 (25 bp)
ACATATGTCATTGTCTGCATCTAGA
LOC_Os08g25310
Os.27595.1.S2_at--900--2711Chr08:15265474..15265498 (25 bp)
AAGCATCGAGTTCTCTTTGCCAAAC
LOC_Os08g25310
Os.27595.1.S2_at--1027--7391Chr08:15265512..15265536 (25 bp)
GTGATCCTGTGGTATGGCAAAATTG
LOC_Os08g25310
Os.27595.1.S2_at--100--8531Chr08:15265558..15265582 (25 bp)
TGGAAAGTGCCTTGCATCAGGAATT
LOC_Os08g25310
Target Sequence 
GAATCTGATCTCGAACGCACAAAGAAGGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAGGA
AGTGATTAGGAGGCAGCTAAGGAGACGAAGATTTTGTGCGTAATAAAGAGACCTAACTCCAGAATTAACAACACATGTCA
TTGAGAAATAAGACTCAGGAGTACATTTGGCGGCNAAATTATGCATAGGACATGGTTGATGAGTGCAGACACTTGGATTC
GGTGTTTGGATTGGCTCAAAGAATGGGTGGCAGGAGCCCAGAAACAGCAAAATATCAGCTCCCCTTCTGAATCTAAGAGG
CTTGTCTATCCTTGATGTTAGCATAGGATGTTAGGATGGATGGCAAAAAGAAATGTAGAATAGGTAAAAATGGGAATGGA
TGTGAAACATATGTCATTGTCTGCATCTAGAAACATAAGCATCGAGTTCTCTTTGCCAAACAAATTTTCTTTATGTGATC
CTGTGGTATGGCAAAATTGTAAGGGAAATTGTAAGAATTATGGAAAGTGCCTTGCATCAGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27595.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis