Browse Element(s) Details


OsAffx.5920.1.S1_at

Description tigr:9636.m02481
TID=OsAffx.5920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2530011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25290OsAffx.29344.1.S1_at10/118+15226503..15228668hypothetical protein
LOC_Os08g25300OsAffx.5920.1.S1_at11/118+15249567..15251054hypothetical protein
LOC_Os08g25310Os.27595.1.S2_at11/118+15258729..15265628phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os08g25310Os.27595.1.S1_at11/118+15258729..15265628phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os08g25330OsAffx.22947.1.S1_x_at11/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.2.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.3.S1_x_at4/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25330OsAffx.22947.5.S1_x_at1/118+15274968..15279542retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5920.1.S1_at--633--6651Chr08:15249597..15249621 (25 bp)
GTTGACGACAACGATTGTGCCGACT
LOC_Os08g25300
OsAffx.5920.1.S1_at--1089--8691Chr08:15249612..15249636 (25 bp)
TGTGCCGACTGTGCATGCAGTGCAA
LOC_Os08g25300
OsAffx.5920.1.S1_at--841--2291Chr08:15249635..15249659 (25 bp)
AAAGGGCCCAACAAGATTTAGCGAT
LOC_Os08g25300
OsAffx.5920.1.S1_at--787--6171Chr08:15249698..15249722 (25 bp)
GAGGAGGAGACACTCATGGCCACCC
LOC_Os08g25300
OsAffx.5920.1.S1_at--885--7711Chr08:15249752..15249776 (25 bp)
GGTGGAAGACCTTGACGTGCCCCGT
LOC_Os08g25300
OsAffx.5920.1.S1_at--149--1391Chr08:15249788..15249812 (25 bp)
AGACCTGGTGACAGCCCGACGTGGT
LOC_Os08g25300
OsAffx.5920.1.S1_at--16--1311Chr08:15249835..15249859 (25 bp)
AGAGTTCTAGCGAGGGCAAGTCCCG
LOC_Os08g25300
OsAffx.5920.1.S1_at--1027--5171Chr08:15249850..15249874 (25 bp)
GCAAGTCCCGTCACCATGATGGCAA
LOC_Os08g25300
OsAffx.5920.1.S1_at--66--6131Chr08:15250254..15250278 (25 bp)
GAGTGGTGAGGCCTACTATTGATAT
LOC_Os08g25300
OsAffx.5920.1.S1_at--965--271Chr08:15250275..15250299 (25 bp)
ATATGGCAAAATGGCTCTCTAAGTT
LOC_Os08g25300
OsAffx.5920.1.S1_at--714--4811Chr08:15250288..15250312 (25 bp)
GCTCTCTAAGTTTGGCCAATGTGCG
LOC_Os08g25300
Target Sequence 
GTTGACGACAACGATTGTGCCGACTGTGCATGCAGTGCAAAGGGCCCAACAAGATTTAGCGATGGTGGAGCCGGCACGGA
GACAATGAAGGCCGGCTCAAGGAGGAGGAGACACTCATGGCCACCCCGAGCATGGAGGGGTCCGCTGACTGATGGGGTGG
AAGACCTTGACGTGCCCCGTCTCCGCCCACTAGACCTGGTGACAGCCCGACGTGGTGGAGTGAGGGCATTGTGGTGGCAG
AGTTCTAGCGAGGGCAAGTCCCGTCACCATGATGGCAACGGAGTTATGGCAACGGAGAGGGCGCAACAAGGATGGGGAAG
GAGCCAACAAAGAATGAAGTCGGGGCAGTGGAGACCGAGGCGAGTGGTGAGGCCTACTATTGATATGGCAAAATGGCTCT
CTAAGTTTGGCCAATGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis