Browse Element(s) Details


OsAffx.29344.1.S1_at

Description tigr:9636.m02480
TID=OsAffx.29344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ethylene-responsive elongation factor EF-Ts precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2529010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein
LOC_Os08g25260OsAffx.24317.6.S1_x_at3/118+15211633..15213886transposon protein, putative, unclassified
LOC_Os08g25270OsAffx.29343.1.S1_at11/118+15219391..15220254hypothetical protein
LOC_Os08g25280Os.52606.1.S1_at11/118+15221376..15224041pentatricopeptide, putative, expressed
LOC_Os08g25290OsAffx.29344.1.S1_at10/118+15226503..15228668hypothetical protein
LOC_Os08g25300OsAffx.5920.1.S1_at11/118+15249567..15251054hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29344.1.S1_at--760--9891Chr08:15226574..15226598 (25 bp)
TACTAGATTTTCTACCGGGAAGGAT
LOC_Os08g25290
OsAffx.29344.1.S1_at--588--5311Chr08:15226592..15226616 (25 bp)
GAAGGATGGGTCTCACTGCACAGAA
LOC_Os08g25290
OsAffx.29344.1.S1_at--859--8012Chr08:18523095..18523119 (25 bp)
GGAGGACAAAGGAAACTCTGCTTTT
NONE
OsAffx.29344.1.S1_at--68--4892Chr08:18523114..18523138 (25 bp)
GCTTTTCCATCCAATCGGTACTTTG
NONE
OsAffx.29344.1.S1_at--656--3011Chr08:15226659..15226683 (25 bp)
AATCGGTACTTTGCTGGCTGGTCCT
LOC_Os08g25290
OsAffx.29344.1.S1_at--980--8331Chr08:15226674..15226702 (25 bp)
GGCTGGTCCTTGATTGGCATAATTA
LOC_Os08g25290
OsAffx.29344.1.S1_at--1075--6491Chr08:15227223..15227305 (25 bp)
GATATATGGGTTGGGTCGTCTTGCT
LOC_Os08g25290
OsAffx.29344.1.S1_at--62--9311Chr08:15227341..15227365 (25 bp)
TCCCCTTGATGCTCTTAAGAGAGTT
LOC_Os08g25290
OsAffx.29344.1.S1_at--721--5171Chr08:15227378..15227402 (25 bp)
GCAATGCATATCGTTGCAACAAAAC
LOC_Os08g25290
OsAffx.29344.1.S1_at--487--5711NONE
GACTCAAAGCGTCCTGAATGATTTG
NONE
OsAffx.29344.1.S1_at--368--6071Chr08:15228286..15228637 (25 bp)
GAGTTCAAAGGCCTGATGAGTACAC
LOC_Os08g25290
Target Sequence 
TACTAGATTTTCTACCGGGAAGGATGGGTCTCACTGCACAGAATGGGTGGGAGGGGAGGACAAAGGAAACTCTGCTTTTC
CATCCAATCGGTACTTTGCTGGCTGGTCCTTGATTGGCATAATTATGAAGTTCTATTTGATATATGGGTTGGGTCGTCTT
GCTGGCTTGATCACACTAGAGGCAGAAGACAGCAATGCTCCCCTTGATGCTCTTAAGAGAGTTGGGAAATCTATTGCAAT
GCATATCGTTGCAACAAAACCATTGTTTTTATCAAAAGAACTGGTCTCCGCTTCAGCTGTTGAAAATGAGAGGGGCATAC
TCCGGACTCAAAGCGTCCTGAATGATTTGTCAAAGGAAGTTGGTGAAGGAGTTCAAAGGCCTGATGAGTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis