Browse Element(s) Details


OsAffx.29343.1.S1_at

Description tigr:9636.m02478
TID=OsAffx.29343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2527011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25220NANA8+15188769..15195800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25230OsAffx.5918.1.S1_at11/118+15197273..15198600hypothetical protein
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein
LOC_Os08g25260OsAffx.24317.6.S1_x_at3/118+15211633..15213886transposon protein, putative, unclassified
LOC_Os08g25270OsAffx.29343.1.S1_at11/118+15219391..15220254hypothetical protein
LOC_Os08g25280Os.52606.1.S1_at11/118+15221376..15224041pentatricopeptide, putative, expressed
LOC_Os08g25290OsAffx.29344.1.S1_at10/118+15226503..15228668hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29343.1.S1_at--587--8071Chr08:15219672..15219696 (25 bp)
GGAGCAGCCGATGATTCCAAGAGAA
LOC_Os08g25270
OsAffx.29343.1.S1_at--548--5971Chr08:15219692..15219716 (25 bp)
GAGAAACGCCGTTGCAGGAGCCGTT
LOC_Os08g25270
OsAffx.29343.1.S1_at--378--7731Chr08:15219762..15219786 (25 bp)
GGTGGACCACCTCTTCCTGCATGTG
LOC_Os08g25270
OsAffx.29343.1.S1_at--822--9051Chr08:15219779..15219803 (25 bp)
TGCATGTGCTCAGCGGTGATGTCCC
LOC_Os08g25270
OsAffx.29343.1.S1_at--22--7771Chr08:15219793..15219817 (25 bp)
GGTGATGTCCCACGAGAGCGCATCC
LOC_Os08g25270
OsAffx.29343.1.S1_at--629--1231Chr08:15219890..15219914 (25 bp)
AGTTCGGCCGCATTGACTCTGGCGA
LOC_Os08g25270
OsAffx.29343.1.S1_at--474--10631Chr08:15219974..15219998 (25 bp)
TTCGCATTCCAGCACCGCGGGTGTC
LOC_Os08g25270
OsAffx.29343.1.S1_at--190--7511Chr08:15220120..15220144 (25 bp)
GTGGTCTCACTCAACTCATGCGGGT
LOC_Os08g25270
OsAffx.29343.1.S1_at--288--6691Chr08:15220143..15220167 (25 bp)
GTTGCCTCGCCGGTTATGGAGGAAC
LOC_Os08g25270
OsAffx.29343.1.S1_at--260--3331Chr08:15220179..15220203 (25 bp)
CACTCAAGCTGTGCGGGCTGCCAGT
LOC_Os08g25270
OsAffx.29343.1.S1_at--412--8331Chr08:15220194..15220218 (25 bp)
GGCTGCCAGTGGCAACCCTTCAAAT
LOC_Os08g25270
Target Sequence 
GGAGCAGCCGATGATTCCAAGAGAAACGCCGTTGCAGGAGCCGTTGATCTTTGCCGCTGCCGTCGACCCCTGCGGCGGCG
ACGGCGGCACGGTGGACCACCTCTTCCTGCATGTGCTCAGCGGTGATGTCCCACGAGAGCGCATCCCTCTCCATCCCGCT
AGGCCGTCACGCTCTCTGCCCTCTCCCGCCACTTCCGCGTCCTCTCGTGACCCGTCCCAGTTCGGCCGCATTGACTCTGG
CGACCTTCCCCGACCTGCTCCCGTCGCTCCCGGCGAGGCCGTCCTTCATCCGCCGCCTCGCCTTCGCATTCCAGCACCGC
GGGTGTCCTCCTCCGCCTTCTCCCGACTCCTCGACGCCACCGCCGACCGCGGCCTTTCCGAGCTTGCCGTCTGCCTGCAC
CGCAACGGGTTCCTTCCCAAGAACCTCCTCTCCATCCGCTCCCTCACCGTGGTCTCACTCAACTCATGCGGGTTGCCTCG
CCGGTTATGGAGGAACGGCAGGTGGGCCACTCAAGCTGTGCGGGCTGCCAGTGGCAACCCTTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis