Browse Element(s) Details


OsAffx.5918.1.S1_at

Description tigr:9636.m02474
TID=OsAffx.5918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25190Os.45173.1.S1_x_at3/118+15169874..15178265retrotransposon protein, putative, unclassified
LOC_Os08g25200OsAffx.17143.1.S1_at11/118+15179461..15181210Paired amphipathic helix repeat family protein, expressed
LOC_Os08g25210OsAffx.29340.1.S1_at10/118+15183170..15187107hypothetical protein
LOC_Os08g25220NANA8+15188769..15195800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25230OsAffx.5918.1.S1_at11/118+15197273..15198600hypothetical protein
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein
LOC_Os08g25260OsAffx.24317.6.S1_x_at3/118+15211633..15213886transposon protein, putative, unclassified
LOC_Os08g25270OsAffx.29343.1.S1_at11/118+15219391..15220254hypothetical protein
LOC_Os08g25280Os.52606.1.S1_at11/118+15221376..15224041pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5918.1.S1_at--501--3331Chr08:15198499..15198523 (25 bp)
CACTGCAAGGGATCTCACCGTGAGT
LOC_Os08g25230
OsAffx.5918.1.S1_at--859--2771Chr08:15198435..15198459 (25 bp)
AAGAGCTCCTTCATGGACAGCGGCA
LOC_Os08g25230
OsAffx.5918.1.S1_at--326--9691Chr08:15198329..15198348 (20 bp)
TCACGGCAGACCACGGCGAGCAGTT
LOC_Os08g25230
OsAffx.5918.1.S1_at--1076--4591Chr08:15197611..15197632 (22 bp)
GCGAGCAGTTTCACCGGCCGGTCGA
LOC_Os08g25230
OsAffx.5918.1.S1_at--814--7531Chr08:15197575..15197599 (25 bp)
GTGGCTCTCCTATATGACGCTGACG
LOC_Os08g25230
OsAffx.5918.1.S1_at--1069--5251Chr08:15197548..15197572 (25 bp)
GAATCCCGAGCAGTTTCACAAGGTG
LOC_Os08g25230
OsAffx.5918.1.S1_at--778--3211Chr08:15197530..15197554 (25 bp)
CAAGGTGCTCTTGATATGCCAGCAT
LOC_Os08g25230
OsAffx.5918.1.S1_at--398--1091Chr08:15197433..15197457 (25 bp)
AGTGGACCAATAGCACCTCGTACTA
LOC_Os08g25230
OsAffx.5918.1.S1_at--1107--5931Chr08:15197361..15197385 (25 bp)
GAGCACATGACTGCCTGGCCGATGG
LOC_Os08g25230
OsAffx.5918.1.S1_at--321--8471Chr08:15197346..15197370 (25 bp)
TGGCCGATGGTCGACTGTCACGTCT
LOC_Os08g25230
OsAffx.5918.1.S1_at--467--2271Chr08:15197315..15197339 (25 bp)
AAATCCCACGAGTCTTGCATCATTG
LOC_Os08g25230
Target Sequence 
CACTGCAAGGGATCTCACCGTGAGTTCGTGTGGGAGGAGAAGGGGCGCAGCGAAGAGGCGGAGGAAGAGCTCCTTCATGG
ACAGCGGCAGGGAGAGCTCACCGTCGGCGAGGCACGGGAGGTCGCGGGGAAGGAAGCGGGACCTGACGGCGTCGGAGTCG
GCGGCGGCGCGGAAGTCACGGCAGACCACGGCGAGCAGTTTCACCGGCCGGTCGAGGGCCGCAGCGGTGGCTCTCCTATA
TGACGCTGACGCCGAATCCCGAGCAGTTTCACAAGGTGCTCTTGATATGCCAGCATGGCCCATGGCTGCAACCTCAACCT
TGTCAGTCGCCTCCGGCAAGTCGATCGGCAACCAGGTCTACAACGTCGAGTGGACCAATAGCACCTCGTACTACTTCAAC
TCGACCTCCTGCCCCGCCACCCATCAGCATCCTGCCACTCGAGCACATGACTGCCTGGCCGATGGTCGACTGTCACGTCT
CGACTCAAATCCCACGAGTCTTGCATCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis