Browse Element(s) Details


OsAffx.17143.1.S1_at

Description tigr:9636.m02468
TID=OsAffx.17143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F20P5.23 gene product
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2520011/11Paired amphipathic helix repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25169NANA8+15155369..15155784NA
LOC_Os08g25180NANA8+15164974..15166500retrotransposon protein, putative, unclassified
LOC_Os08g25190Os.45173.1.S1_x_at3/118+15169874..15178265retrotransposon protein, putative, unclassified
LOC_Os08g25200OsAffx.17143.1.S1_at11/118+15179461..15181210Paired amphipathic helix repeat family protein, expressed
LOC_Os08g25210OsAffx.29340.1.S1_at10/118+15183170..15187107hypothetical protein
LOC_Os08g25220NANA8+15188769..15195800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25230OsAffx.5918.1.S1_at11/118+15197273..15198600hypothetical protein
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17143.1.S1_at--479--7791Chr08:15179836..15179860 (25 bp)
GGTCCATTAAGCCACAAACTTCCAT
LOC_Os08g25200
OsAffx.17143.1.S1_at--751--2391Chr08:15179821..15179845 (25 bp)
AAACTTCCATGCGTACATCGGTGAA
LOC_Os08g25200
OsAffx.17143.1.S1_at--876--5311Chr08:15179799..15179823 (25 bp)
GAAGGTGCATAAGTTGACGACAGAA
LOC_Os08g25200
OsAffx.17143.1.S1_at--1049--5211Chr08:15179745..15179769 (25 bp)
GAATAAATTTTTGCGTCACCCTGAG
LOC_Os08g25200
OsAffx.17143.1.S1_at--714--7091Chr08:15179731..15179755 (25 bp)
GTCACCCTGAGAAGTTCCATGCATT
LOC_Os08g25200
OsAffx.17143.1.S1_at--920--1212Chr01:1616851..1616870 (20 bp)
AGTTCCATGCATTCATACACACCAT
NONE
OsAffx.17143.1.S1_at--679--2191Chr08:15179703..15179727 (25 bp)
ACACACCATGATTGATTTCTCCAGG
LOC_Os08g25200
OsAffx.17143.1.S1_at--1094--7591Chr08:15179551..15179573 (23 bp)
GGGCAGGATTAACACTCATACTGTT
LOC_Os08g25200
OsAffx.17143.1.S1_at--1132--6771Chr08:15179529..15179553 (25 bp)
GTTATTGAACGTGTGAAGATCCTTT
LOC_Os08g25200
OsAffx.17143.1.S1_at--110--1291Chr08:15179513..15179537 (25 bp)
AGATCCTTTTTGATGGGTATCCTGA
LOC_Os08g25200
OsAffx.17143.1.S1_at--1--7871Chr08:15179498..15179522 (25 bp)
GGTATCCTGATCTACTCCTTGCATT
LOC_Os08g25200
Target Sequence 
GGTCCATTAAGCCACAAACTTCCATGCGTACATCGGTGAAGGTGCATAAGTTGACGACAGAAGATGCAATGAATTACATT
CTTACCATCAAGAATAAATTTTTGCGTCACCCTGAGAAGTTCCATGCATTCATACACACCATGATTGATTTCTCCAGGGG
CAGGATTAACACTCATACTGTTATTGAACGTGTGAAGATCCTTTTTGATGGGTATCCTGATCTACTCCTTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis