Browse Element(s) Details


OsAffx.29340.1.S1_at

Description tigr:9636.m02469
TID=OsAffx.29340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2521010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25180NANA8+15164974..15166500retrotransposon protein, putative, unclassified
LOC_Os08g25190Os.45173.1.S1_x_at3/118+15169874..15178265retrotransposon protein, putative, unclassified
LOC_Os08g25200OsAffx.17143.1.S1_at11/118+15179461..15181210Paired amphipathic helix repeat family protein, expressed
LOC_Os08g25210OsAffx.29340.1.S1_at10/118+15183170..15187107hypothetical protein
LOC_Os08g25220NANA8+15188769..15195800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25230OsAffx.5918.1.S1_at11/118+15197273..15198600hypothetical protein
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein
LOC_Os08g25260OsAffx.24317.6.S1_x_at3/118+15211633..15213886transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29340.1.S1_at--886--10211NONE
TATTGCCGATGAAGCTAGTGTGCCG
NONE
OsAffx.29340.1.S1_at--353--1791Chr08:15185928..15185952 (25 bp)
ACCGATGGCCAGATTTGCCGGTCTC
LOC_Os08g25210
OsAffx.29340.1.S1_at--10--10071Chr08:15186028..15186052 (25 bp)
TAGTCGCTGGCGCTAGATCCAGCCG
LOC_Os08g25210
OsAffx.29340.1.S1_at--353--6271Chr08:15186328..15186352 (25 bp)
GATGTCGAGGGCACCCAGCTCTGCA
LOC_Os08g25210
OsAffx.29340.1.S1_at--1089--9471Chr08:15186347..15186371 (25 bp)
TCTGCAGCCTCCTTAACGAGCTCTA
LOC_Os08g25210
OsAffx.29340.1.S1_at--377--3211Chr08:15186459..15186483 (25 bp)
CAAGCAGCTAGCGAGGTCGGTCGTC
LOC_Os08g25210
OsAffx.29340.1.S1_at--427--4811Chr08:15186492..15186516 (25 bp)
GCTCGGGACAGAGGCGCCGATTACA
LOC_Os08g25210
OsAffx.29340.1.S1_at--701--6551Chr08:15186510..15186534 (25 bp)
GATTACATCGGGTACCGTCCGCGAG
LOC_Os08g25210
OsAffx.29340.1.S1_at--386--4611Chr08:15186530..15186554 (25 bp)
GCGAGCTCGATTCCTCTAGGCGCTA
LOC_Os08g25210
OsAffx.29340.1.S1_at--691--10091Chr08:15186546..15186570 (25 bp)
TAGGCGCTACGCAACGCCAGCGAGT
LOC_Os08g25210
OsAffx.29340.1.S1_at--258--431Chr08:15187053..15187077 (25 bp)
ATCATCACTTGTGATATGTCTCCCT
LOC_Os08g25210
Target Sequence 
TATTGCCGATGAAGCTAGTGTGCCGGTGGCGCCGCGCCTCACCGATGGCCAGATTTGCCGGTCTCCCTTCCTGCGGGTCG
TCGGCGGCAGATTCGCGGGGCGATGCCTCGCCGCCGGAGTGATGGATGCCGAGCTCCGCCTAGTCGCTGGCGCTAGATCC
AGCCGCAGCTGGGACGACATCCACCGCTGCCCCGATGTCGAGGGCACCCAGCTCTGCAGCCTCCTTAACGAGCTCTACCA
CAAGCCCGTCGTGCCCGCTGGCATCTTGCTGCCGCCCGACACTGGCGACGACCGCGACCGCTCGGACATGATGCGGTGGC
TCGACAAGCAGCTAGCGAGGTCGGTCGTCTACGTCGCGCTCGGGACAGAGGCGCCGATTACATCGGGTACCGTCCGCGAG
CTCGATTCCTCTAGGCGCTACGCAACGCCAGCGAGTGGCTGCCGGAGGGGTACGAGGCGCGGCGTGGTGGAGATGAGACA
TTTAACTCAGATAATATTATCATCACTTGTGATATGTCTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis