Browse Element(s) Details


Os.52606.1.S1_at

Description gb:AK068279.1
DB_XREF= gi:32978297
TID=Os.52606.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145H04, full insert sequence.
FL= gb:AK068279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2528011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25230OsAffx.5918.1.S1_at11/118+15197273..15198600hypothetical protein
LOC_Os08g25240OsAffx.29342.1.S1_at11/118+15201275..15202534BTB/POZ domain containing protein
LOC_Os08g25250OsAffx.24317.3.S1_at5/118+15202877..15207632hypothetical protein
LOC_Os08g25250OsAffx.24317.5.S1_x_at4/118+15202877..15207632hypothetical protein
LOC_Os08g25260OsAffx.24317.6.S1_x_at3/118+15211633..15213886transposon protein, putative, unclassified
LOC_Os08g25270OsAffx.29343.1.S1_at11/118+15219391..15220254hypothetical protein
LOC_Os08g25280Os.52606.1.S1_at11/118+15221376..15224041pentatricopeptide, putative, expressed
LOC_Os08g25290OsAffx.29344.1.S1_at10/118+15226503..15228668hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52606.1.S1_at--466--5431Chr08:15223515..15223539 (25 bp)
GAACCAGGCATTGAGCATTACGCTT
LOC_Os08g25280
Os.52606.1.S1_at--374--5931Chr08:15223527..15223551 (25 bp)
GAGCATTACGCTTCTGTAGTCAATC
LOC_Os08g25280
Os.52606.1.S1_at--807--9731Chr08:15223546..15223570 (25 bp)
TCAATCTTTTTGGTCGTTCTGGGAA
LOC_Os08g25280
Os.52606.1.S1_at--560--1971Chr08:15223571..15223595 (25 bp)
ACTGCATGCTGCCAAGGAGTTTATT
LOC_Os08g25280
Os.52606.1.S1_at--31--7991Chr08:15223600..15223624 (25 bp)
GGATGCCAATCAAACCAGCTGCAGC
LOC_Os08g25280
Os.52606.1.S1_at--945--8911Chr08:15223642..15223666 (25 bp)
TGAGCGCTTGCCATCTTTTTGGCAA
LOC_Os08g25280
Os.52606.1.S1_at--6--4151Chr08:15223688..15223712 (25 bp)
CGCTGAAATGGCACTCTTGGCAGAT
LOC_Os08g25280
Os.52606.1.S1_at--1144--6351Chr08:15223710..15223734 (25 bp)
GATCCAACAGACAGTGGCCCTTATG
LOC_Os08g25280
Os.52606.1.S1_at--50--10351Chr08:15223750..15223774 (25 bp)
TTTATGCCTCTAAAGGACTCTGGGC
LOC_Os08g25280
Os.52606.1.S1_at--912--5711Chr08:15223765..15223789 (25 bp)
GACTCTGGGCTGATGTGCACAACTT
LOC_Os08g25280
Os.52606.1.S1_at--930--6471Chr08:15223965..15223989 (25 bp)
GATACTTCTGACCATACTCTGTTGT
LOC_Os08g25280
Target Sequence 
GAACCAGGCATTGAGCATTACGCTTCTGTAGTCAATCTTTTTGGTCGTTCTGGGAAACTGCATGCTGCCAAGGAGTTTAT
TGAAAGGATGCCAATCAAACCAGCTGCAGCTGTTTGGAGAAGTTTGCTGAGCGCTTGCCATCTTTTTGGCAACGCTGAAA
TTGGGAGGTATGCCGCTGAAATGGCACTCTTGGCAGATCCAACAGACAGTGGCCCTTATGTTTTACTGTCAAATATTTAT
GCCTCTAAAGGACTCTGGGCTGATGTGCACAACTTAAGACAGCAGATGGATAGTTCTGGCACAGTGAAGGAAACAGGATG
TAGCTGGATTGAAGTGACAAAGGAAGTTCACACGTTCATTGTGAGAGGGAGAGAACACCCAGAGGCAGAACTGATATATT
CAGTACTGGATGAGCTGACGAGTCTAATTAAAAATTTGGGTTATGTTCCTGATACTTCTGACCATACTCTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis