Browse Element(s) Details


Os.27633.1.A1_at

Description gb:AK067734.1
DB_XREF= gi:32977752
TID=Os.27633.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K13, full insert sequence.
FL= gb:AK067734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g484007/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein
LOC_Os02g48390Os.8840.1.S1_at11/112+29619592..29621911Ribose-phosphate pyrophosphokinase 4, putative, expressed
LOC_Os02g48400Os.27633.1.A1_at7/112+29629988..29633482expressed protein
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27633.1.A1_at--528--4651Chr02:29633012..29633036 (25 bp)
GCGTCAGTCTATCAGAGCTTCGAAA
LOC_Os02g48400
Os.27633.1.A1_at--1108--6511Chr02:29633215..29633239 (25 bp)
GATATTCGCATGCTCTATGACTCGT
LOC_Os02g48400
Os.27633.1.A1_at--837--5711Chr02:29633233..29633257 (25 bp)
GACTCGTCATGCCTCAATGATGCTT
LOC_Os02g48400
Os.27633.1.A1_at--989--9671Chr02:29633260..29633284 (25 bp)
TCACCCGTTTTCATTTGGCTGATGG
LOC_Os02g48400
Os.27633.1.A1_at--1014--7491Chr02:29633402..29633426 (25 bp)
GTGGTGATATGCTTCCTCAGATTAC
LOC_Os02g48400
Os.27633.1.A1_at--1092--1251Chr02:29633420..29633444 (25 bp)
AGATTACAGATTCCGGATACCCTAT
LOC_Os02g48400
Os.27633.1.A1_at--163--8591Chr02:29633445..29633469 (25 bp)
TGGTTTCTTTATGCTTCCTCAGATT
LOC_Os02g48400
Os.27633.1.A1_at--614--591Chr02:29633500..29633524 (25 bp)
ATGCCTGACCCGCAGAACTGTTTAT
NONE
Os.27633.1.A1_at--388--10211Chr02:29633522..29633546 (25 bp)
TATTTTTTGATGCTTGCGTTGCCCT
NONE
Os.27633.1.A1_at--578--9911Chr02:29633553..29633577 (25 bp)
TACTCGCTTAGTGTTGTCTGTTCTT
NONE
Os.27633.1.A1_at--372--8771NONE
TGTATTTAATACATCCTCCGTTGGG
NONE
Target Sequence 
GCGTCAGTCTATCAGAGCTTCGAAAAAAGAGAAAAGCCCTTAGCAATGCACATAAAAGATGAAGGCGCAAGCTAACAGAT
AGACAGTGGTTACTTTGTGCGTGGATATTCGCATGCTCTATGACTCGTCATGCCTCAATGATGCTTCTTCACCCGTTTTC
ATTTGGCTGATGGAAAATCTTTTGGAGGCCAGCTTGTGGATTGTAGGTGGCTGCCACAAAATTGTGATTCCNTTCTAGGG
GCAATCCAGGGCTGTTAAAACCTCTCAAGCTTTCAAATTGTAGCAGCTGTGTGGTGATATGCTTCCTCAGATTACAGATT
CCGGATACCCTATTGGTTTCTTTATGCTTCCTCAGATTTCAGATNCCGGATACTCTATTGGTTTCTTTATGCCTGACCCG
CAGAACTGTTTATTTTTTGATGCTTGCGTTGCCCTGTGCCCTACTCGCTTAGTGTTGTCTGTTCTTGTGAAACGTGTTTT
AGTGGGAAGTCTAGTAAAAAAAACAGGTTTAGTTTTTCATTCTGTTAACATGTATTTAATACATCCTCCGTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27633.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis