Browse Element(s) Details


Os.27647.1.S1_at

Description gb:AK061236.1
DB_XREF= gi:32971254
TID=Os.27647.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1641_C04.27 (OJ1641_C04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B07, full insert sequence.
FL= gb:AK061236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g073009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27647.1.S1_at--774--9131Chr07:3619717..3619741 (25 bp)
TGCTGGCAGTATAATTCACGCCCGG
LOC_Os07g07300
Os.27647.1.S1_at--141--4271Chr07:3618864..3618888 (25 bp)
CCGGCCACCTGAGTTCCAGGAGAAA
LOC_Os07g07300
Os.27647.1.S1_at--98--1711Chr07:3618827..3618851 (25 bp)
ACCAATTGTATTTGACTGGGTGATT
LOC_Os07g07300
Os.27647.1.S1_at--1121--6531Chr07:3618792..3618816 (25 bp)
GATTTTTGCTGTGTAGTCCTTTTCA
LOC_Os07g07300
Os.27647.1.S1_at--964--1451NONE
AGCAATACTCCGTGGTAAACCTCAG
NONE
Os.27647.1.S1_at--92--4251NONE
CCGTGGTAAACCTCAGCAATGTGTT
NONE
Os.27647.1.S1_at--85--5191Chr07:3618486..3618510 (25 bp)
GCAATGTGTTGCTGTCCGATCGATC
LOC_Os07g07300
Os.27647.1.S1_at--138--8711Chr07:3618474..3618498 (25 bp)
TGTCCGATCGATCCGTGCCATAAGG
LOC_Os07g07300
Os.27647.1.S1_at--1035--9171Chr07:3618459..3618483 (25 bp)
TGCCATAAGGGCATGCGAGAACATT
LOC_Os07g07300
Os.27647.1.S1_at--281--5491Chr07:3618441..3618465 (25 bp)
GAACATTTCGCAGACACTGGTTGCA
LOC_Os07g07300
Os.27647.1.S1_at--235--5051Chr07:3618432..3618456 (25 bp)
GCAGACACTGGTTGCATTATCAAAT
LOC_Os07g07300
Target Sequence 
TGCTGGCAGTATAATTCACGCCCGGCCCCCGCTGCTGTGAACGCAGATGGAGCGGGCGCCGGCCACCTGAGTTCCAGGAG
AAAGAAGCAATGGAAACCAATTGTATTTGACTGGGTGATTATGTTGACAAGATTTTTGCTGTGTAGTCCTTTTCAAAATG
TNAAAAATGTACGACGTCGTTNATTTTTTTTAAACGTTTGACCATTCATCTTATTCAAAAATTTTAGTATAAGTATATAA
AAGTATAAGTTAAGATTANANNNNANTTAAAACAAATAAAAAAATAAATAGTATTTTTTTAAAAAAATAAATAAGATAAA
TAGTCAAACGTTATGAAAAAGTCAACGAAACCATACATTTTGAAATTGAGGAAGTATCACATTTACATACATTTTGAAAT
TGAGGAAGCAATACTCCGTGGTAAACCTCAGCAATGTGTTGCTGTCCGATCGATCCGTGCCATAAGGGCATGCGAGAACA
TTTCGCAGACACTGGTTGCATTATCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis