Browse Element(s) Details


Os.27664.1.S1_at

Description gb:AK101388.1
DB_XREF= gi:32986597
TID=Os.27664.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036G08, full insert sequence.
FL= gb:AK101388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4086011/11Casein kinase I, epsilon isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein
LOC_Os02g40860Os.27664.1.S1_at11/112+24760940..24766881Casein kinase I, epsilon isoform, putative, expressed
LOC_Os02g40870Os.16625.1.S1_at11/112+24767680..24769171Phosphatidylinositol N-acetylglucosaminyltransferase family protein, expressed
LOC_Os02g40880OsAffx.2932.1.S1_s_at11/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40880Os.7150.1.S1_at1/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40890Os.7522.1.S1_at10/112+24774059..24776899expressed protein
LOC_Os02g40900Os.24611.1.S1_at11/112+24777346..24780675expressed protein
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0016310biological_processphosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004681molecular_functioncasein kinase I activity
GO:0004712molecular_functionprotein threonine/tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27664.1.S1_at--304--10251Chr02:24766338..24766362 (25 bp)
TTTGAGGACCTTTGAACGCCTTTCA
LOC_Os02g40860
Os.27664.1.S1_at--406--5451Chr02:24766351..24766375 (25 bp)
GAACGCCTTTCAATCAGTGCTGACA
LOC_Os02g40860
Os.27664.1.S1_at--989--6051Chr02:24766409..24766433 (25 bp)
GAGTTGCTGCTCCAGTGAGGACACT
LOC_Os02g40860
Os.27664.1.S1_at--625--7671Chr02:24766435..24766459 (25 bp)
GGGATTCCTTCACACGATGATTACT
LOC_Os02g40860
Os.27664.1.S1_at--235--1211Chr02:24766519..24766543 (25 bp)
AGTTTGCTTACTGAATCTTGGCGCA
LOC_Os02g40860
Os.27664.1.S1_at--490--5571Chr02:24766559..24766583 (25 bp)
GAAATCATTTTACACGCCATTCAGA
LOC_Os02g40860
Os.27664.1.S1_at--466--7311Chr02:24766603..24766627 (25 bp)
GTGCTGGTCCAATTAATGCTGATGT
LOC_Os02g40860
Os.27664.1.S1_at--213--6951Chr02:24766696..24766720 (25 bp)
GTAGTATTTCCTTTGTGCACTGCAA
LOC_Os02g40860
Os.27664.1.S1_at--1096--3311Chr02:24766734..24766758 (25 bp)
CACTCTGCCACTATACTCTTAAGAT
LOC_Os02g40860
Os.27664.1.S1_at--204--251Chr02:24766764..24766788 (25 bp)
ATATCCTTTTTTGCCTTAGTGCCCT
LOC_Os02g40860
Os.27664.1.S1_at--866--311Chr02:24766793..24766817 (25 bp)
ATACTCCGTCACATTATTTCCTTAA
LOC_Os02g40860
Target Sequence 
TTTGAGGACCTTTGAACGCCTTTCAATCAGTGCTGACAGAAGGAAATAATGCTTCGAAGAGCAAAAGATGTGAGTTGCTG
CTCCAGTGAGGACACTGGGGATTCCTTCACACGATGATTACTGATCAACAAGTAAAAACCATTCTGTGCTACAGATGATG
CTGAGATATGCTTAAGAGTGAAGTTTGCTTACTGAATCTTGGCGCAAAAGAAATGGTTAAAGAAATCATTTTACACGCCA
TTCAGAAGAACCCGGACCAGCAACNGTGCTGGTCCAATTAATGCTGATGTTGATCAAATATTTGTAGAAATGTTATTGAA
ATAAAGCAGTTCATTACTAGCNAAANATGTACTATCACGTAGTATTTCCTTTGTGCACTGCAACTAGAACTTCTGCCACT
CTGCCACTATACTCTTAAGATAATCAATATCCTTTTTTGCCTTAGTGCCCTTTAGATACTCCGTCACATTATTTCCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis