Browse Element(s) Details


Os.27783.1.S1_at

Description gb:AK060514.1
DB_XREF= gi:32970532
TID=Os.27783.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F05, full insert sequence.
FL= gb:AK060514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2896011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27783.1.S1_at--148--9751Chr05:16897102..16897126 (25 bp)
TAATAGTCTACCTCGTGCTTTACAT
LOC_Os05g28960
Os.27783.1.S1_at--339--8831Chr05:16897069..16897093 (25 bp)
TGATTGAAATGCCTTGCCATCGCGC
LOC_Os05g28960
Os.27783.1.S1_at--1009--531Chr05:16897051..16897075 (25 bp)
ATCGCGCTTCTGTATACTGATGCTG
LOC_Os05g28960
Os.27783.1.S1_at--562--1971Chr05:16897036..16897060 (25 bp)
ACTGATGCTGAGTGACTTGCTTGTA
LOC_Os05g28960
Os.27783.1.S1_at--172--10131Chr05:16897010..16897034 (25 bp)
TATGAGTACAAGTTCCTGGTGTTGC
LOC_Os05g28960
Os.27783.1.S1_at--449--10671Chr05:16896998..16897022 (25 bp)
TTCCTGGTGTTGCATGATTCCTCAT
LOC_Os05g28960
Os.27783.1.S1_at--55--1571Chr05:16896964..16896988 (25 bp)
AGCTATGTTAATATCCTCCCAGTAA
LOC_Os05g28960
Os.27783.1.S1_at--898--7471Chr05:16896917..16896941 (25 bp)
GTGTGGTTCAGTAATCATGTCAGTT
LOC_Os05g28960
Os.27783.1.S1_at--1028--6551Chr05:16896886..16896910 (25 bp)
GATTACATTCACATGTCTGGGACAC
LOC_Os05g28960
Os.27783.1.S1_at--946--9451Chr05:16896871..16896895 (25 bp)
TCTGGGACACACTTCACCATGCAAT
LOC_Os05g28960
Os.27783.1.S1_at--1092--651Chr05:16896853..16896877 (25 bp)
ATGCAATCCATCGATGTGAGCTTTA
LOC_Os05g28960
Target Sequence 
TAATAGTCTACCTCGTGCTTTACATCAGAAAGATGATTGAAATGCCTTGCCATCGCGCTTCTGTATACTGATGCTGAGTG
ACTTGCTTGTAATATGAGTACAAGTTCCTGGTGTTGCATGATTCCTCATGTTGAGAGGAGCTATGTTAATATCCTCCCAG
TAAACTGTAAAATTATTTGTCCATAGTGTGGTTCAGTAATCATGTCAGTTATACATGATTACATTCACATGTCTGGGACA
CACTTCACCATGCAATCCATCGATGTGAGCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis