Browse Element(s) Details


Os.27806.1.S1_at

Description gb:AK109283.1
DB_XREF= gi:32994492
TID=Os.27806.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B12, full insert sequence.
FL= gb:AK109283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1278011/11expressed protein
LOC_Os12g181301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12750NANA7+7288259..7288909hypothetical protein
LOC_Os07g12760OsAffx.16233.1.S1_x_at11/117+7292031..7292345hypothetical protein
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein
LOC_Os07g12800Os.27156.1.S1_at11/117+7319840..7322092expressed protein
LOC_Os07g12810OsAffx.16234.1.S1_x_at11/117+7322579..7327621expressed protein
LOC_Os07g12810Os.54473.1.S1_at10/117+7322579..7327621expressed protein
LOC_Os07g12820OsAffx.16235.1.S1_at11/117+7331590..7332536B3 DNA binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27806.1.S1_at--848--8791Chr07:7312511..7312535 (25 bp)
TGTTCGTCCGCAGCGACAGGTTCGG
LOC_Os07g12780
Os.27806.1.S1_at--83--2131Chr07:7312526..7312550 (25 bp)
ACAGGTTCGGGTGGTTCTGCGGCGC
LOC_Os07g12780
Os.27806.1.S1_at--988--7231Chr07:7312696..7312720 (25 bp)
GTCGCCGCCAATTAGGTTCACCATT
LOC_Os07g12780
Os.27806.1.S1_at--594--7891Chr07:7312710..7312734 (25 bp)
GGTTCACCATTTCTGAATTCAGCTT
LOC_Os07g12780
Os.27806.1.S1_at--751--5211Chr07:7312724..7312748 (25 bp)
GAATTCAGCTTCAAATATTTTACTA
LOC_Os07g12780
Os.27806.1.S1_at--168--4251Chr07:7312863..7312887 (25 bp)
GCCGTTGGCCGGAGTAGTTTTACAG
LOC_Os07g12780
Os.27806.1.S1_at--714--51Chr07:7312875..7312899 (25 bp)
AGTAGTTTTACAGAGTTTTAGCCAT
LOC_Os07g12780
Os.27806.1.S1_at--741--5951Chr07:7312924..7312948 (25 bp)
GAGCAACTGTTAGCTTTGTCAGAGT
LOC_Os07g12780
Os.27806.1.S1_at--132--4891Chr07:7312936..7312960 (25 bp)
GCTTTGTCAGAGTTTAACTGTCAGA
LOC_Os07g12780
Os.27806.1.S1_at--93--9812Chr07:7312950..7312974 (25 bp)
TAACTGTCAGATTATATCGATCAAT
LOC_Os07g12780
Os.27806.1.S1_at--484--9191Chr07:7312987..7313011 (25 bp)
TCCAATGTAATCCTATAACCAACTA
LOC_Os07g12780
Target Sequence 
TGTTCGTCCGCAGCGACAGGTTCGGGTGGTTCTGCGGCGCCATGGAGCAGGCGCTGCATCGGAGCGTGAGCCGCAGCAGG
AAGAGGACGGCGGCGGAAGCAGTGGGGGGAGAAGAAGGGGAGGACGAGCGCCGCCGCCGCCGCCGCCACAGCATCGTCGG
GGCTTTCCTGCCGCCGCTCCCAGCCGTCGCCGCCAATTAGGTTCACCATTTCTGAATTCAGCTTCAAATATTTTACTACA
NATTGTATTNTCTTTTGCTGCTTCTTGTGTTTNGAGTTGTTTGCAGGTCANCGGNNGGTGGAGAAGACGACGGANGGCNG
GCCGGNGTTGGANTTGGATCGGCTAGAGCTCGCCGCCGTTGGCCGGAGTAGTTTTACAGAGTTTTAGCCATAGGATGTTT
ATAATTATATATATTGAGCAACTGTTAGCTTTGTCAGAGTTTAACTGTCAGATTATATCGATCAATCAGTAATAGATTTC
CAATGTAATCCTATAACCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis