Browse Element(s) Details


Os.27810.1.S1_at

Description gb:AK106274.1
DB_XREF= gi:32991483
TID=Os.27810.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.49 (OJ1714_H10.49), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G12, full insert sequence.
FL= gb:AK106274.1 gb:AK105789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0685011/11PrMC3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27810.1.S1_at--924--6391Chr07:3343495..3343519 (25 bp)
GATCTACCAACTACTTTTCACTTTT
LOC_Os07g06850
Os.27810.1.S1_at--817--10331Chr07:3343480..3343504 (25 bp)
TTTCACTTTTAAGCGCTGTTTGGGT
LOC_Os07g06850
Os.27810.1.S1_at--1076--2331Chr07:3343441..3343465 (25 bp)
AAAGCGAAATGGTTTGTAGCCTAAT
LOC_Os07g06850
Os.27810.1.S1_at--549--10471Chr07:3343414..3343438 (25 bp)
TTACAATAGCCTCCCTAACACCTTA
LOC_Os07g06850
Os.27810.1.S1_at--143--10451Chr07:3343392..3343416 (25 bp)
TTAGGTTTTTGGTTCGACTCTCCAT
LOC_Os07g06850
Os.27810.1.S1_at--1089--7631Chr07:3343367..3343391 (25 bp)
GGGAGCTGTATTTTGATCTGTGTTC
LOC_Os07g06850
Os.27810.1.S1_at--1153--471Chr07:3343352..3343376 (25 bp)
ATCTGTGTTCTCTACAAGTTTGCAA
LOC_Os07g06850
Os.27810.1.S1_at--685--5151Chr07:3343331..3343355 (25 bp)
GCAACTCTACTTGCTAACAGTTATG
LOC_Os07g06850
Os.27810.1.S1_at--501--8491Chr07:3343188..3343212 (25 bp)
TGGAAAATCCGAGTTTTTTCTCTCT
LOC_Os07g06850
Os.27810.1.S1_at--866--10391Chr07:3343155..3343179 (25 bp)
TTTTGCTCTCTACAAGTTTGCAACT
LOC_Os07g06850
Os.27810.1.S1_at--686--5151Chr07:3343136..3343160 (25 bp)
GCAACTCCACTTGCTAACAGTTATG
LOC_Os07g06850
Target Sequence 
GATCTACCAACTACTTTTCACTTTTAAGCGCTGTTTGGGTTAAAAAAAATAATTAAAGCGAAATGGTTTGTAGCCTAATG
GTTACAATAGCCTCCCTAACACCTTAGGTTTTTGGTTCGACTCTCCATGGGAGCTGTATTTTGATCTGTGTTCTCTACAA
GTTTGCAACTCTACTTGCTAACAGTTATGCATTTGAAAATATAAATGAAANNGTGCAGAGACAAGCGACGATATATNTTG
GACACAATTGTTCTTTTCATTTATTTATTTTCTTGTTGATTTATACTCGTGATATGATATACACGGTTGGAAAATCCGAG
TTTTTTCTCTCTTTTTTTTTTTTTGCTCTCTACAAGTTTGCAACTCCACTTGCTAACAGTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis