Browse Element(s) Details


Os.27815.1.S1_at

Description gb:AK069765.1
DB_XREF= gi:32979789
TID=Os.27815.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029O14, full insert sequence.
FL= gb:AK069765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0662011/11PBS lyase HEAT-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0030089cellular_componentphycobilisome
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27815.1.S1_at--174--71Chr12:3208133..3208157 (25 bp)
ATTGCACTTCTGGAGGAATTCGCGA
LOC_Os12g06620
Os.27815.1.S1_at--359--5211Chr12:3208118..3208142 (25 bp)
GAATTCGCGAAGGATCCTGAGCCTA
LOC_Os12g06620
Os.27815.1.S1_at--321--291Chr12:3208094..3208118 (25 bp)
ATAGTCTCCCAAAGCTGTGAAGTCG
LOC_Os12g06620
Os.27815.1.S1_at--398--2851Chr12:3208075..3208099 (25 bp)
AAGTCGCGCTCAGCATGCTCGAATA
LOC_Os12g06620
Os.27815.1.S1_at--787--3031Chr12:3207958..3208060 (25 bp)
AATCCTTCGAGTTTTTGTTTCTGCA
LOC_Os12g06620
Os.27815.1.S1_at--803--1251Chr12:3207898..3207922 (25 bp)
AGATATATCTACTCCAGGCTTCTAT
LOC_Os12g06620
Os.27815.1.S1_at--880--10191Chr12:3207876..3207900 (25 bp)
TATATCGATCTACTGCCAAGCTGAC
LOC_Os12g06620
Os.27815.1.S1_at--803--10791Chr12:3207784..3207808 (25 bp)
TTGTTGCTTATGTTTTTCACCACTA
LOC_Os12g06620
Os.27815.1.S1_at--1060--10351Chr12:3207772..3207796 (25 bp)
TTTTTCACCACTATTGTTTCTCCTG
LOC_Os12g06620
Os.27815.1.S1_at--985--3831Chr12:3207742..3207766 (25 bp)
CTGCTGCTTATGTCTTGGACCATGA
LOC_Os12g06620
Os.27815.1.S1_at--1095--271Chr12:3207566..3207590 (25 bp)
ATAGGCGGACACGTTCTAGAGCAAA
LOC_Os12g06620
Target Sequence 
ATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGA
ATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGA
TATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTC
ACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGC
TTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATAC
CATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGA
AAGAGAACAATAGGCGGACACGTTCTAGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis