Browse Element(s) Details


Os.27841.1.S1_at

Description gb:AF271293.1
DB_XREF= gi:14279467
TID=Os.27841.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27841 (NCBI UniGene Cluster)
DEF=Oryza sativa nucleotide-binding leucine-rich-repeat protein 1 mRNA, complete cds.
PROD=nucleotide-binding leucine-rich-repeat protein1
FL= gb:AF271293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g450601/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44990Os.4123.1.S1_s_at4/1111+26735263..26738354NB-ARC domain containing protein, expressed
LOC_Os11g45000NANA11+26738748..26741615retrotransposon protein, putative, unclassified
LOC_Os11g45010NANA11+26741799..26743553retrotransposon protein, putative, unclassified
LOC_Os11g45020Os.13019.1.S1_at1/1111+26743855..26745783hypothetical protein
LOC_Os11g45030OsAffx.24840.1.S1_at1/1111+26747006..26747227hypothetical protein
LOC_Os11g45040NANA11+26751716..26753593hypothetical protein
LOC_Os11g45050Os.26915.1.A1_at2/1111+26754286..26757387NB-ARC domain containing protein, expressed
LOC_Os11g45060Os.4123.1.S1_s_at2/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45060Os.27841.1.S1_at1/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45070OsAffx.7416.1.S1_at11/1111+26769073..26769535hypothetical protein
LOC_Os11g45080OsAffx.7417.1.S1_at11/1111+26772860..26774505hypothetical protein
LOC_Os11g45090Os.4123.1.S1_s_at5/1111+26775425..26778238NB-ARC domain containing protein
LOC_Os11g45100OsAffx.24562.1.S1_at5/1111+26782996..26783271hypothetical protein
LOC_Os11g45110NANA11+26790809..26791417hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27841.1.S1_at--716--991NONE
AGGATGGAACTTGTGCTTCGAAGGA
NONE
Os.27841.1.S1_at--208--6191NONE
GAGGAAGGAGCCCTATCTCCAACTC
NONE
Os.27841.1.S1_at--580--7911NONE
GGTTGGAACTTGACGACTGCCCCAA
NONE
Os.27841.1.S1_at--495--6231NONE
GATGGCTCTCCCACGACTGCTTGGA
NONE
Os.27841.1.S1_at--864--5311NONE
GAAGGTGCTCCTTATAAGAGATGCA
NONE
Os.27841.1.S1_at--223--6671NONE
GTTGCTTGTAGATGAATGCCCGAAT
NONE
Os.27841.1.S1_at--54--5951NONE
GAGCAGCTATGGCTGGCCAAGAATA
NONE
Os.27841.1.S1_at--536--8551NONE
TGGATGGCACAAGGTATTACACTAA
NONE
Os.27841.1.S1_at--1117--10833Chr11:26778558..26778599 (25 bp)
TTGGGATTTTTCACTGGGTTGTACA
NONE
Os.27841.1.S1_at--395--8631Chr11:26757462..26757486 (25 bp)
TGGGTTGTACATTCATGCTGCCCCT
NONE
Os.27841.1.S1_at--595--4291Chr11:26718246..26718270 (25 bp)
CCTCTGCTCTTCACTTGTATATATG
NONE
Target Sequence 
AGGATGGAACTTGTGCTTCGAAGGAGGAAGGAGCCCTATCTCCAACTCCAAGGTCATTGTGGCTGCTGCCTTGTTTGACG
AGGTTGGAACTTGACGACTGCCCCAAGCTGATGGCTCTCCCACGACTGCTTGGACAGCAGGCCACCAACTTGAAGGTGCT
CCTTATAAGAGATGCAAGCTGCTTGAAGACGGTGGAGGACCTCCCTTTCCTCTCTGGTGTCCTTTCAATTGGTGGCTGTG
AAGGCCTGGAGAGGGTCTCCAACCTTCCCCAAGTGAGAGAGTTGCTTGTAGATGAATGCCCGAATTTGAGGCATGTTGAG
GAGTTGGGCGGTTTGGAGCAGCTATGGCTGGCCAAGAATATGCAGGAGATCTCTCAGTTGTGGGTCCCTGGGCTTCAGGA
GCAACACCGCCAGCTCCATGGAGATGAGCATGAGCTGGAGGTCAACGAGTGGCTCTGAGAGCCAATTAGTTTGGATGGCA
CAAGGTATTACACTAATTGGTTGGGATTTTTCACTGGGTTGTACATTCATGCTGCCCCTCTGCTCTTCACTTGTATATAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis