Browse Element(s) Details


Os.27846.1.S1_at

Description gb:CB624072
DB_XREF= gi:29619060
DB_XREF=OSIIEa12E19.r
CLONE=OSIIEa12E19
TID=Os.27846.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27846 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_177372.1 (A.thaliana) disulfide bond formation protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5234011/11Endoplasmic oxidoreductin 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27846.1.S1_at--1011--8991Chr03:30013817..30013841 (25 bp)
TGAAGATTCTTTTCTCTGTTGATGG
LOC_Os03g52340
Os.27846.1.S1_at--806--10271Chr03:30013448..30013807 (25 bp)
TTTGAATCAATCACTCCAGCTGCAG
LOC_Os03g52340
Os.27846.1.S1_at--1044--7131Chr03:30013414..30013438 (25 bp)
GTCATTGCACTAGTAAACCTTCTGA
LOC_Os03g52340
Os.27846.1.S1_at--766--3411Chr03:30013380..30013404 (25 bp)
CAGAATCTGTCAACTTTGTACATGA
LOC_Os03g52340
Os.27846.1.S1_at--187--5891Chr03:30013319..30013343 (25 bp)
GAGCTCTTCTACTGTGAAACCGGTG
LOC_Os03g52340
Os.27846.1.S1_at--697--2371Chr03:30013303..30013327 (25 bp)
AAACCGGTGTTTCCTATCTGAATCG
LOC_Os03g52340
Os.27846.1.S1_at--811--5951Chr03:30013107..30013131 (25 bp)
GAGAATTTTGCAGATCCTAGACAGA
LOC_Os03g52340
Os.27846.1.S1_at--16--211Chr03:30013027..30013051 (25 bp)
ATTTGGCAATGGGACCTCTTTTGTA
LOC_Os03g52340
Os.27846.1.S1_at--1077--7951Chr03:30013000..30013024 (25 bp)
GGATCACTGCCCATTTTGCAATGTT
LOC_Os03g52340
Os.27846.1.S1_at--49--771Chr03:30012958..30012982 (25 bp)
ATGTCCTAACATGCCCATAGACTTC
LOC_Os03g52340
Os.27846.1.S1_at--202--611Chr03:30012948..30012972 (25 bp)
ATGCCCATAGACTTCTTCATGTGTA
LOC_Os03g52340
Target Sequence 
TGAAGATTCTTTTCTCTGTTGATGGAGAGAACCATTTGAATCAATCACTCCAGCTGCAGCGAAATGAGGTCATTGCACTA
GTAAACCTTCTGAATAGGCTGTCAGAATCTGTCAACTTTGTACATGAAAAAGGACCATCAATTGAGGATGTCATTAAACA
ACAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGNAATAGCGTTAAACTGAGATGTATTTACAACTTT
GATCCATACTAGAACAATGATGTAGGTGCTGGGGTGAAGCTTACTAGAGAATTTTGCAGATCCTAGACAGAAGATATACA
GAACTTTGAGANCCAAACAATTGCAATTTTCGATGTAAATCGTGGTATTTGGCAATGGGACCTCTTTTGTAAGGGATCAC
TGCCCATTTTGCAATGTTGCATGATCAAAGAGATGATGTCCTAACATGCCCATAGACTTCTTCATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis