Browse Element(s) Details


Os.27853.1.S1_at

Description gb:AK067833.1
DB_XREF= gi:32977851
TID=Os.27853.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122E14, full insert sequence.
FL= gb:AK067833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5068011/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50640Os.18057.1.A1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50640OsAffx.3028.1.S1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50650NANA2+30934489..30936206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27853.1.S1_at--178--7071Chr02:30953205..30953229 (25 bp)
GTAAGGAATCAAGACTCCCTGCTTT
LOC_Os02g50680
Os.27853.1.S1_at--22--5731Chr02:30953193..30953217 (25 bp)
GACTCCCTGCTTTGAAGTTAGCTTG
LOC_Os02g50680
Os.27853.1.S1_at--417--2051Chr02:30953160..30953184 (25 bp)
ACTTATCTTTACAGTTCCACACCAT
LOC_Os02g50680
Os.27853.1.S1_at--898--171Chr02:30953113..30953137 (25 bp)
ATTTTAGGCATCTCTTCTCGTGACG
LOC_Os02g50680
Os.27853.1.S1_at--1121--10251Chr02:30953054..30953078 (25 bp)
TTTGATTGTCCTATCACAGCACGAC
LOC_Os02g50680
Os.27853.1.S1_at--164--10731Chr02:30952985..30953009 (25 bp)
TTGCAATGTTTGCTGGCCGCCTTGG
LOC_Os02g50680
Os.27853.1.S1_at--961--9331Chr02:30952959..30952983 (25 bp)
TCGCGGTCCTCGAGGATAGGTGATC
LOC_Os02g50680
Os.27853.1.S1_at--441--7391Chr02:30952940..30952964 (25 bp)
GTGATCCGGACCAACAACTCTGGAA
LOC_Os02g50680
Os.27853.1.S1_at--826--8171Chr02:30952919..30952943 (25 bp)
GGAACTGTCGAGATATCTGCTAGGA
LOC_Os02g50680
Os.27853.1.S1_at--38--3091Chr02:30952894..30952918 (25 bp)
AATACTCCTATTTTCCTGAGAAAGC
LOC_Os02g50680
Os.27853.1.S1_at--1038--3591Chr02:30952801..30952825 (25 bp)
CATTGCCTTGGAACTTGTGTACCTA
LOC_Os02g50680
Target Sequence 
GTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTTGAGGAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATG
ATGTGTATATANATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGATTGT
CCTATCACAGCACGACNAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCAATGTTTGCTGGCCGC
CTTGGGTCGCGGTCCTCGAGGATAGGTGATCCGGACCAACAACTCTGGAACTGTCGAGATATCTGCTAGGAAATACTCCT
ATTTTCCTGAGAAAGCGTAGAAGTTGTGTACGTCAATGCATTAAGAGACAATAAAACAACACAATGTTCTTACAAAGAAA
TGTACATTGCCTTGGAACTTGTGTACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis