Browse Element(s) Details


Os.27856.1.S1_at

Description gb:AK066934.1
DB_XREF= gi:32976952
TID=Os.27856.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093A09, full insert sequence.
FL= gb:AK066934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2470411/11Acyl-coenzyme A oxidase 3, peroxisomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24660OsAffx.8916.1.S1_at2/116+14482685..14485693hypothetical protein
LOC_Os06g24670NANA6+14486499..14489310retrotransposon protein, putative, unclassified
LOC_Os06g24680NANA6+14490210..14492750retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24690OsAffx.27811.1.S1_at9/116+14494583..14496814hypothetical protein
LOC_Os06g24704Os.27856.1.S1_at11/116+14503082..14511951Acyl-coenzyme A oxidase 3, peroxisomal precursor, putative, expressed
LOC_Os06g24720NANA6+14521418..14521889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24730Os.11724.2.S2_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24730Os.11724.2.S1_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24740OsAffx.15601.1.S1_at11/116+14534000..14534698hypothetical protein
LOC_Os06g24740OsAffx.31273.1.S1_x_at2/116+14534000..14534698hypothetical protein
LOC_Os06g24750NANA6+14535307..14536451transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0001676biological_processlong-chain fatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27856.1.S1_at--54--5231Chr06:14503777..14503801 (25 bp)
GAATATTCCTACTGGTTCTTTAAAG
LOC_Os06g24704
Os.27856.1.S1_at--157--10031Chr06:14503580..14503604 (25 bp)
TAGACGAATCTGCATCCTTTTTGAG
LOC_Os06g24704
Os.27856.1.S1_at--690--271Chr06:14503555..14503579 (25 bp)
ATATGGTTGCCTATCGCGAGAGAAT
LOC_Os06g24704
Os.27856.1.S1_at--536--5631Chr06:14503504..14503528 (25 bp)
GACACTGTGCAGTGAACTCAGGCCC
LOC_Os06g24704
Os.27856.1.S1_at--1002--3611Chr06:14503473..14503497 (25 bp)
CTTGCTATTGTCAGTTCCTTCGGAA
LOC_Os06g24704
Os.27856.1.S1_at--451--4551Chr06:14503430..14503454 (25 bp)
GCCCACTCGCTTTTGACTGGATTGA
LOC_Os06g24704
Os.27856.1.S1_at--945--8231Chr06:14503405..14503429 (25 bp)
GGCAAATGCACGGTCTTCTGGGAAT
LOC_Os06g24704
Os.27856.1.S1_at--240--8211Chr06:14503385..14503409 (25 bp)
GGAATGAATGACTCCACGCTACCAT
LOC_Os06g24704
Os.27856.1.S1_at--1105--6231Chr06:14503324..14503348 (25 bp)
GATGGACAGCCAAACACACTATACG
LOC_Os06g24704
Os.27856.1.S1_at--113--7031Chr06:14503288..14503312 (25 bp)
GTACATTTGCAACTACTTCCTGTCA
LOC_Os06g24704
Os.27856.1.S1_at--773--6251Chr06:14503224..14503248 (25 bp)
GATGGTGATGTTGATCTGGACTTCA
LOC_Os06g24704
Target Sequence 
GAATATTCCTACTGGTTCTTTAAAGGATATATTGGGCTTACTAAGGTCTTTATATGTTATGGTTTGCATAGACGAATCTG
CATCCTTTTTGAGATATGGTTGCCTATCGCGAGAGAATGTAGCCGCTGCTAGGAAAGAAGTGATGACACTGTGCAGTGAA
CTCAGGCCCCACGCACTTGCTATTGTCAGTTCCTTCGGAATCCCAGATGCCTTCCTTAGCCCACTCGCTTTTGACTGGAT
TGAGGCAAATGCACGGTCTTCTGGGAATGAATGACTCCACGCTACCATCAGGTAGTTATGGGGTTTTCCAATGGAACTAC
TACAGATGGACAGCCAAACACACTATACGCAAAGATAGGTGTACATTTGCAACTACTTCCTGTCAAGATAGGTTACAATA
ATTTCTCTGAAGTGTATAGTTCGAGATGGTGATGTTGATCTGGACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis