Browse Element(s) Details


Os.27867.1.S1_at

Description gb:NM_188289.1
DB_XREF= gi:34903661
GEN=B1015E06.16
TID=Os.27867.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27867 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative CRK1 protein (B1015E06.16), mRNA.
PROD=putative CRK1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1043011/11Cell division-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27867.1.S1_at--535--9791Chr01:5495638..5495662 (25 bp)
TAAGACCCAGTGACTTTGGCGCTGC
LOC_Os01g10430
Os.27867.1.S1_at--467--4791Chr01:5495683..5495707 (25 bp)
GCTCCAGCTATCGAGCTATGCAGCA
LOC_Os01g10430
Os.27867.1.S1_at--834--1151Chr01:5495822..5495846 (25 bp)
AGTCTAGCTGTGAAATGCCTTTTAA
LOC_Os01g10430
Os.27867.1.S1_at--1148--10451Chr01:5495894..5495918 (25 bp)
TTAGCGGCAATTTGGGTGTTCTACA
LOC_Os01g10430
Os.27867.1.S1_at--489--711Chr01:5495931..5495955 (25 bp)
ATGAGGCTGGCAATTCTCCATGTTC
LOC_Os01g10430
Os.27867.1.S1_at--392--4331Chr01:5495948..5495972 (25 bp)
CCATGTTCTGGTTTCAGTTTGCTGA
LOC_Os01g10430
Os.27867.1.S1_at--367--1271Chr01:5496023..5496047 (25 bp)
AGATCTACGAAGTTTTGGGCATGCT
LOC_Os01g10430
Os.27867.1.S1_at--903--4971Chr01:5496041..5496065 (25 bp)
GCATGCTTGGTTCCTTGTTTTTGTA
LOC_Os01g10430
Os.27867.1.S1_at--1046--10371Chr01:5496059..5496083 (25 bp)
TTTTGTATAGTGTACCCCACGCTAG
LOC_Os01g10430
Os.27867.1.S1_at--513--6991Chr01:5496090..5496114 (25 bp)
GTACGCCCTACATGTGGCCAAGTTA
LOC_Os01g10430
Os.27867.1.S1_at--114--3071Chr01:5496121..5496145 (25 bp)
AATCTTGCTTACTCCTTGCTAAGAC
LOC_Os01g10430
Target Sequence 
TAAGACCCAGTGACTTTGGCGCTGCCCCGGTNTTCCCTTCAAGCCGCTCCAGCTATCGAGCTATGCAGCAGTAAGGCCAA
TGCTTAGCAAGTAATTTCGTATCGACGTGATTTTGCAAGAGAAGTTTTATTGGCTTCCTTTCCCCCATATTTCCGGGGGA
TATATATCACGTTATGTACAGGAAAGTCTAGCTGTGAAATGCCTTTTAATTGGGAAAAAAAANCTTTGAAGGAGAGGGAA
GAAGGCCATTTGTTAATTTAGCGGCAATTTGGGTGTTCTACAGATGTCATTATCATGAGGCTGGCAATTCTCCATGTTCT
GGTTTCAGTTTGCTGAAATGCTAGCTCAATTGTATATTTCAGATTGCTAGGTATGCTGTGTGAATTAGATCTACGAAGTT
TTGGGCATGCTTGGTTCCTTGTTTTTGTATAGTGTACCCCACGCTAGTGGGTCGTACGCCCTACATGTGGCCAAGTTATT
GAGAAATCTTGCTTACTCCTTGCTAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis