Browse Element(s) Details


Os.27881.1.S1_s_at

Description gb:AK073870.1
DB_XREF= gi:32983893
TID=Os.27881.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072I01, full insert sequence.
FL= gb:AK073870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3951011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27881.1.S1_s_at--1078--5971Chr07:23674440..23674464 (25 bp)
GAGAAAGCTTATAGTGAGGACCAGA
LOC_Os07g39510
Os.27881.1.S1_s_at--488--271Chr07:23674517..23674541 (25 bp)
ATAGTGATTGGAAAACCGCTGAACT
LOC_Os07g39510
Os.27881.1.S1_s_at--366--3291Chr07:23674552..23674576 (25 bp)
CAAATGCAGGCATATGAAACCATGT
LOC_Os07g39510
Os.27881.1.S1_s_at--957--5551Chr07:23674567..23674591 (25 bp)
GAAACCATGTAAAATATCGCTGAAT
LOC_Os07g39510
Os.27881.1.S1_s_at--628--3091Chr07:23674579..23674603 (25 bp)
AATATCGCTGAATATTGGGTTTCAA
LOC_Os07g39510
Os.27881.1.S1_s_at--427--5191Chr07:23674588..23674612 (25 bp)
GAATATTGGGTTTCAATTCTCCCCA
LOC_Os07g39510
Os.27881.1.S1_s_at--791--8611Chr07:23674594..23674618 (25 bp)
TGGGTTTCAATTCTCCCCAAAATTG
LOC_Os07g39510
Os.27881.1.S1_s_at--432--3151Chr07:23674602..23674626 (25 bp)
AATTCTCCCCAAAATTGATTATCTG
LOC_Os07g39510
Os.27881.1.S1_s_at--683--6551Chr07:23674618..23674642 (25 bp)
GATTATCTGGCGAGGACCATCGTCA
LOC_Os07g39510
Os.27881.1.S1_s_at--478--491Chr07:23674622..23674646 (25 bp)
ATCTGGCGAGGACCATCGTCATTAA
LOC_Os07g39510
Os.27881.1.S1_s_at--940--8091Chr07:23674631..23674655 (25 bp)
GGACCATCGTCATTAAATTGCATTT
LOC_Os07g39510
Target Sequence 
GAGAAAGCTTATAGTGAGGACCAGAAGTACNAAGAAGGCNAGTATATATNAGAGAAGCACATGATGCTGANAGAAGGATA
GTGATTGGAAAACCGCTGAACTATTAAGTCTGCAAATGCAGGCATATGAAACCATGTAAAATATCGCTGAATATTGGGTT
TCAATTCTCCCCAAAATTGATTATCTGGCGAGGACCATCGTCATTAAATTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27881.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis