Browse Element(s) Details


Os.27901.1.S1_at

Description gb:AK059956.1
DB_XREF= gi:32969974
TID=Os.27901.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D03, full insert sequence.
FL= gb:AK059956.1 gb:AK058782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5243011/11Regulator of ribonuclease-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52480Os.19953.1.S1_at11/112+32105442..32107080Cyclin-dependent kinase inhibitor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27901.1.S1_at--135--3591Chr02:32082820..32082844 (25 bp)
CATTTGATCATGAATGGCGAGCTTC
LOC_Os02g52430
Os.27901.1.S1_at--891--4471Chr02:32082748..32082772 (25 bp)
GCCGGCCCTATCGTGACGCTGAAGG
LOC_Os02g52430
Os.27901.1.S1_at--875--10151Chr02:32082740..32082764 (25 bp)
TATCGTGACGCTGAAGGTCTACGAG
LOC_Os02g52430
Os.27901.1.S1_at--674--7811Chr02:32082725..32082749 (25 bp)
GGTCTACGAGGACAATGTTCTTGTT
LOC_Os02g52430
Os.27901.1.S1_at--364--2231Chr02:32082714..32082738 (25 bp)
ACAATGTTCTTGTTCGCGAGTTCCT
LOC_Os02g52430
Os.27901.1.S1_at--240--10551Chr02:32082708..32082732 (25 bp)
TTCTTGTTCGCGAGTTCCTGGAGGA
LOC_Os02g52430
Os.27901.1.S1_at--969--4371Chr02:32082677..32082701 (25 bp)
CCAAGGCAGGGTTCTCGTGGTCGAT
LOC_Os02g52430
Os.27901.1.S1_at--850--7491Chr02:32082651..32082675 (25 bp)
GTGGTGGGAGCCTGCGGTGCGCCAT
LOC_Os02g52430
Os.27901.1.S1_at--302--5911Chr02:32082516..32082540 (25 bp)
GAGCTCTGAACTCGCACCCTATGAA
LOC_Os02g52430
Os.27901.1.S1_at--696--7651Chr02:32082423..32082447 (25 bp)
GGGAGTGGCTCTACGCCGATACTGA
LOC_Os02g52430
Os.27901.1.S1_at--399--8491Chr02:32082418..32082442 (25 bp)
TGGCTCTACGCCGATACTGATGGTA
LOC_Os02g52430
Target Sequence 
CATTTGATCATGAATGGCGAGCTTCGTGCTCTCCAGCCCNTCTTCCAAGTCTACGGAAGGCGGCAGGTTTTCGCCGGCCC
TATCGTGACGCTGAAGGTCTACGAGGACAATGTTCTTGTTCGCGAGTTCCTGGAGGAGAAGGGCCAAGGCAGGGTTCTCG
TGGTCGATGGTGGTGGGAGCCTGCGGTGCGCCATTTTGGGTGGCAACCCTGTGCAGCAGGCGCAGAACAATGGGTGGGCT
GGCATCGTCGTCAATGGTTGCATCAGGGACGTGGATGAGATCAATGGCTGCGACATTGGTGTCCGAGCTCTGAACTCGCA
CCCTATGAAANCAAACAAGAAGGGCATCGGGGAGAAGCATGTGCCTGTGACCATTGCAGGGACCAGGATTTGCGACGGGG
AGTGGCTCTACGCCGATACTGATGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis